Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23550 259 / 2e-89 Got1/Sft2-like vescicle transport protein family (.1) AT5G24170 166 / 7e-53 Got1/Sft2-like vescicle transport protein family (.1) AT4G26550 55 / 2e-09 Got1/Sft2-like vescicle transport protein family (.1) AT5G56020 52 / 3e-08 Got1/Sft2-like vescicle transport protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039619 [exp] 321 / 9e-114 AT5G23550 279 / 3e-97 Got1/Sft2-like vescicle transport protein family (.1) Lus10019023 [exp] 171 / 5e-55 AT5G24170 204 / 3e-68 Got1/Sft2-like vescicle transport protein family (.1) Lus10000361 [exp] 143 / 1e-43 AT5G24170 200 / 1e-66 Got1/Sft2-like vescicle transport protein family (.1) Lus10032895 [exp] 49 / 4e-07 AT4G26550 338 / 8e-116 Got1/Sft2-like vescicle transport protein family (.1) Lus10027128 [exp] 48 / 7e-07 AT4G26550 333 / 3e-117 Got1/Sft2-like vescicle transport protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G135000 [exp] 268 / 3e-93 AT5G23550 224 / 1e-75 Got1/Sft2-like vescicle transport protein family (.1) Potri.012G012700 [exp] 171 / 4e-55 AT5G24170 224 / 3e-76 Got1/Sft2-like vescicle transport protein family (.1) Potri.015G017300 [exp] 160 / 8e-51 AT5G24170 220 / 1e-74 Got1/Sft2-like vescicle transport protein family (.1) Potri.014G170700 [exp] 54 / 4e-09 AT4G26550 310 / 3e-108 Got1/Sft2-like vescicle transport protein family (.1) Potri.011G164900 [exp] 48 / 7e-07 AT5G56020 325 / 5e-114 Got1/Sft2-like vescicle transport protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04178 [flax] [poplar] Got1 Got1/Sft2-like family
Representative CDS sequence Show only first row Show all	>Lus10029537 pacid=23149447 polypeptide=Lus10029537 locus=Lus10029537.g ID=Lus10029537.BGIv1.0 annot-version=v1.0 ATGGACAAGATGAACCAGGCCTTGGAGAAGATGAAAATGCTCGTCGGGATGGAAGTCGACGAAGACGACGAAGAACGGCCCTCTGGCTCTGCATCGTCTC CCGATTCTTTCTCTTTCATCGACGACTTCAATCGCAACTGCACCCTCTCCTCTCAGCAGAGGCTTTACGGATTTTCCATCTGCTTCGTCTCGGGCATAGC TTGTACATTTTTGTCTATGCTGGTCTTTCTACATCCAGTTAAGTTTGGAGTTACTTTCACCTTTGGCAATATGCTTGCACTTGGAAGTACAGCGTTCCTG ATAGGTCCAAAACGCCAAGTCACTATGATGCTTGATCCTGTTCGCATATACGCCACAGCTTTGTATCTTGCAAGCATTATTATTGCCTTGTTTTGTGCTG TCTATGTTCACAGCAAGATCTTGACACTCTTCGCCGTCATTCTAGAGTTTGGAGCACTATTTTGGTACAGCTTGAGCTATATTCCATTCGCTCGATCGAT GGTGTCAAAGATCATGGTCAGTTGCTTTGACACTGAATTTTAA
AA sequence Show only first row Show all	>Lus10029537 pacid=23149447 polypeptide=Lus10029537 locus=Lus10029537.g ID=Lus10029537.BGIv1.0 annot-version=v1.0 MDKMNQALEKMKMLVGMEVDEDDEERPSGSASSPDSFSFIDDFNRNCTLSSQQRLYGFSICFVSGIACTFLSMLVFLHPVKFGVTFTFGNMLALGSTAFL IGPKRQVTMMLDPVRIYATALYLASIIIALFCAVYVHSKILTLFAVILEFGALFWYSLSYIPFARSMVSKIMVSCFDTEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23550			Got1/Sft2-like vescicle transp...		Lus10029537 [exp]	0	1
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10039547 [exp]	10.7	0.7022
AT1G18640		PSP	3-phosphoserine phosphatase (....		Lus10017851 [exp]	12.0	0.7964
AT2G47760		AtALG3, ALG3	Arabidopsis thaliana asparagin...		Lus10031921 [exp]	13.0	0.7903
AT5G38790			unknown protein		Lus10034101 [exp]	13.6	0.7845
AT2G19880			Nucleotide-diphospho-sugar tra...		Lus10012951 [exp]	14.2	0.8021
AT2G23093			Major facilitator superfamily ...		Lus10014854 [exp]	14.7	0.7450
AT3G63120		CYCP1;1	cyclin p1;1 (.1)		Lus10022038 [exp]	17.5	0.7344
AT5G66410		PLP3B	phosducin-like protein 3 homol...		Lus10016055 [exp]	19.2	0.7868
AT1G04040			HAD superfamily, subfamily III...		Lus10023731 [exp]	22.1	0.7642
AT4G30400			RING/U-box superfamily protein...		Lus10019973 [exp]	39.7	0.7527

Compare expression of checked genes

Lus10029537 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.