Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07470 189 / 1e-61 Protein of unknown function, DUF538 (.1) AT3G07460 173 / 2e-55 Protein of unknown function, DUF538 (.1.2) AT5G16380 137 / 4e-41 Protein of unknown function, DUF538 (.1) AT5G54530 115 / 4e-33 Protein of unknown function, DUF538 (.1) AT1G61667 115 / 7e-33 Protein of unknown function, DUF538 (.1) AT5G19860 99 / 2e-26 Protein of unknown function, DUF538 (.1) AT1G55265 88 / 4e-22 Protein of unknown function, DUF538 (.1) AT4G02360 69 / 6e-15 Protein of unknown function, DUF538 (.1) AT1G02816 62 / 3e-12 Protein of unknown function, DUF538 (.1) AT4G02370 60 / 2e-11 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039620 [exp] 292 / 7e-102 AT3G07470 181 / 4e-58 Protein of unknown function, DUF538 (.1) Lus10019216 [exp] 219 / 2e-73 AT3G07470 185 / 5e-60 Protein of unknown function, DUF538 (.1) Lus10004300 [exp] 186 / 8e-61 AT3G07470 158 / 4e-50 Protein of unknown function, DUF538 (.1) Lus10025861 [exp] 187 / 4e-60 AT3G07470 171 / 4e-54 Protein of unknown function, DUF538 (.1) Lus10038238 [exp] 174 / 1e-55 AT3G07460 162 / 4e-51 Protein of unknown function, DUF538 (.1.2) Lus10020218 [exp] 142 / 3e-43 AT5G16380 157 / 3e-49 Protein of unknown function, DUF538 (.1) Lus10026841 [exp] 141 / 3e-42 AT5G16380 156 / 6e-48 Protein of unknown function, DUF538 (.1) Lus10007617 [exp] 110 / 7e-31 AT1G61667 175 / 8e-57 Protein of unknown function, DUF538 (.1) Lus10018396 [exp] 106 / 3e-29 AT1G61667 176 / 5e-57 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G177800 [exp] 214 / 8e-72 AT3G07470 192 / 3e-63 Protein of unknown function, DUF538 (.1) Potri.002G238900 [exp] 209 / 2e-69 AT3G07470 193 / 1e-63 Protein of unknown function, DUF538 (.1) Potri.001G410300 [exp] 117 / 1e-33 AT5G54530 179 / 2e-58 Protein of unknown function, DUF538 (.1) Potri.011G129900 [exp] 114 / 2e-32 AT5G54530 181 / 6e-59 Protein of unknown function, DUF538 (.1) Potri.011G032600 [exp] 112 / 1e-31 AT1G61667 177 / 1e-57 Protein of unknown function, DUF538 (.1) Potri.004G029600 [exp] 103 / 2e-28 AT1G61667 175 / 8e-57 Protein of unknown function, DUF538 (.1) Potri.003G217200 [exp] 101 / 3e-27 AT5G19860 196 / 1e-64 Protein of unknown function, DUF538 (.1) Potri.001G008400 [exp] 96 / 2e-25 AT5G19860 205 / 5e-68 Protein of unknown function, DUF538 (.1) Potri.001G008240 [exp] 84 / 2e-20 AT1G55265 137 / 8e-42 Protein of unknown function, DUF538 (.1) Potri.001G008320 [exp] 81 / 2e-19 AT1G55265 135 / 4e-41 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10029538 pacid=23149359 polypeptide=Lus10029538 locus=Lus10029538.g ID=Lus10029538.BGIv1.0 annot-version=v1.0 ATGTTGATGCTGCACCGGATGCTACCTGTATCGTACGTTTGGCTCTCGTTTCTTCTCCTCCTGCTCTGTTTTTGTGATGCCAAACAGCAGCTGGAGGAGA AGGTAGGAGGAGGAGAGTCGATTTATGACATCCTCAAGGCGCGGGCTCTGCCGATGGGGCTCCTCCCCAGAGGCATTAAGGATTTCAGGTTCGATGACTC TGGGTATTTCGAGGCCTATTTGGATCAGGCTTGCAATGCCAAGTTCGAGAGCGAGTTGCATTACGATAGGAATGTATCCGGGACTATCAGCTACGGCCAG ATCGGGAGCCTCTCCGGGATTTCTGCGCAGGATTTGTTCCTCTGGTTCCCTGTCAAGGGAATTCGCGTCGACGTTCCCAGCTCCGGCCTGATCTATTTCG ATGTTGGTGTCGTTCTCAAGCAGTTCTCGCTTTCCTTGTTCGAGACCCCCAGGGATTGTGCCGTCTCCACCGATGATTTCCTCAAGAGTGAAGCACAGAA GCTGAGATACAGAGTTGATCAAAATTTTGGGAGGAGTGCTGTATAG
AA sequence Show only first row Show all	>Lus10029538 pacid=23149359 polypeptide=Lus10029538 locus=Lus10029538.g ID=Lus10029538.BGIv1.0 annot-version=v1.0 MLMLHRMLPVSYVWLSFLLLLLCFCDAKQQLEEKVGGGESIYDILKARALPMGLLPRGIKDFRFDDSGYFEAYLDQACNAKFESELHYDRNVSGTISYGQ IGSLSGISAQDLFLWFPVKGIRVDVPSSGLIYFDVGVVLKQFSLSLFETPRDCAVSTDDFLKSEAQKLRYRVDQNFGRSAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07470			Protein of unknown function, D...		Lus10029538 [exp]	0	1
AT3G07470			Protein of unknown function, D...		Lus10039620 [exp]	1.0	0.8852
					Lus10026314 [exp]	3.9	0.8751
AT3G12610		DRT100	DNA-DAMAGE REPAIR/TOLERATION 1...		Lus10015700 [exp]	6.9	0.8730
					Lus10042355 [exp]	7.7	0.8655
AT3G01390		AVMA10, VMA10	vacuolar membrane ATPase 10 (....		Lus10004213 [exp]	8.4	0.8330
AT1G12310			Calcium-binding EF-hand family...		Lus10004332 [exp]	8.5	0.8586
AT3G23050	AUX_IAA	AXR2, IAA7	AUXIN RESISTANT 2, indole-3-ac...		Lus10002724 [exp]	10.8	0.8349
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10004723 [exp]	11.2	0.7703
AT1G07400			HSP20-like chaperones superfam...		Lus10016457 [exp]	11.5	0.8563
AT1G04560			AWPM-19-like family protein (....		Lus10014456 [exp]	12.3	0.8213

Compare expression of checked genes

Lus10029538 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.