Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56570 43 / 3e-05 SET domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000825 [exp] 115 / 1e-32 ND / Lus10013060 [exp] 107 / 3e-28 AT3G44970 148 / 5e-40 Cytochrome P450 superfamily protein (.1) Lus10001867 [exp] 85 / 4e-21 ND / Lus10007406 [exp] 70 / 6e-16 ND / Lus10003369 [exp] 68 / 3e-14 ND / Lus10011605 [exp] 67 / 3e-14 ND / Lus10013825 [exp] 65 / 1e-12 AT3G56570 439 / 9e-152 SET domain-containing protein (.1) Lus10026538 [exp] 63 / 6e-12 AT3G56570 505 / 2e-175 SET domain-containing protein (.1) Lus10012402 [exp] 59 / 3e-11 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G135700 [exp] 51 / 6e-08 AT3G56570 446 / 9e-153 SET domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029539 pacid=23149377 polypeptide=Lus10029539 locus=Lus10029539.g ID=Lus10029539.BGIv1.0 annot-version=v1.0 ATGAGGCGGCGTCTGAATGCGTTGCTACAGTGGATGAAGTCACAAGGGATATGGTGGAGCGAAGCACTGGAGTTCGTGGAAAATGAAGGTTCCATCAGGG CAATGGCATTGCGGGATTTGAGGGAAGGGGATCTGGTCGCAAGAATACCTGATAGGGCTAGAATTTGTAGCAGTTATCTACCCTTTTTCTGCGCGCATTT GAGTGGTATTATGGAGATAGGTGATCTGACCATGAAGCCAAGGGCGTGGTGTGTAGAGCAATTGGGGTTCGAGAAAGGAGGTCGAGATTGGATTTGGCAC AGCAGAGGGACTGCACGCCGTGCAGTCCATCAAATTACTCAAGAGCACGGCGTTAAAACATCCGCACGGCGTGCACCAATGCACGCCGTTCAAACCTTTG AGCGTCGAAGGATGGAGAAAAAGTGGAGCTGCACGGCGTGCAGTCCTCCCTTATTGCGTCGCAGAATGGAGGAGAATTGA
AA sequence Show only first row Show all	>Lus10029539 pacid=23149377 polypeptide=Lus10029539 locus=Lus10029539.g ID=Lus10029539.BGIv1.0 annot-version=v1.0 MRRRLNALLQWMKSQGIWWSEALEFVENEGSIRAMALRDLREGDLVARIPDRARICSSYLPFFCAHLSGIMEIGDLTMKPRAWCVEQLGFEKGGRDWIWH SRGTARRAVHQITQEHGVKTSARRAPMHAVQTFERRRMEKKWSCTACSPPLLRRRMEEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56570			SET domain-containing protein ...		Lus10029539 [exp]	0	1
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10011998 [exp]	1.0	0.9980
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10040287 [exp]	2.0	0.9928
AT5G27870			Plant invertase/pectin methyle...		Lus10037489 [exp]	2.4	0.9814
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10035782 [exp]	2.8	0.9854
					Lus10032472 [exp]	3.0	0.9913
AT2G45010			PLAC8 family protein (.1.2)		Lus10042885 [exp]	3.2	0.9851
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Lus10029859 [exp]	5.7	0.9653
					Lus10015702 [exp]	6.2	0.9353
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10002907 [exp]	6.9	0.9434
AT1G74920		ALDH10A8	aldehyde dehydrogenase 10A8 (....		Lus10004239 [exp]	7.9	0.9602

Compare expression of checked genes

Lus10029539 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.