Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23530 228 / 3e-73 ATCXE18 carboxyesterase 18 (.1) AT5G27320 138 / 2e-38 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT3G05120 127 / 1e-34 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1) AT3G63010 127 / 3e-34 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) AT5G62180 124 / 3e-33 ATCXE20 carboxyesterase 20 (.1) AT1G68620 124 / 4e-33 alpha/beta-Hydrolases superfamily protein (.1) AT5G16080 114 / 1e-29 ATCXE17 carboxyesterase 17 (.1) AT2G45600 109 / 9e-28 alpha/beta-Hydrolases superfamily protein (.1) AT2G45610 101 / 8e-25 alpha/beta-Hydrolases superfamily protein (.1) AT1G19190 99 / 4e-24 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039162 [exp] 206 / 1e-64 AT5G23530 324 / 3e-110 carboxyesterase 18 (.1) Lus10013774 [exp] 184 / 6e-56 AT5G23530 315 / 2e-106 carboxyesterase 18 (.1) Lus10000928 [exp] 134 / 6e-37 AT5G27320 553 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10002254 [exp] 132 / 3e-36 AT5G27320 550 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10027969 [exp] 127 / 2e-34 AT3G63010 566 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Lus10008439 [exp] 117 / 1e-30 AT5G06570 281 / 8e-94 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10015988 [exp] 115 / 6e-30 AT5G06570 346 / 5e-119 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10036168 [exp] 114 / 9e-30 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10033548 [exp] 113 / 3e-29 AT5G16080 330 / 3e-112 carboxyesterase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G092500 [exp] 243 / 4e-79 AT5G23530 388 / 3e-135 carboxyesterase 18 (.1) Potri.019G014302 [exp] 200 / 2e-62 AT5G23530 329 / 3e-112 carboxyesterase 18 (.1) Potri.001G459400 [exp] 191 / 5e-59 AT5G23530 327 / 1e-111 carboxyesterase 18 (.1) Potri.005G040600 [exp] 131 / 5e-36 AT5G27320 570 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.013G028700 [exp] 132 / 6e-36 AT5G27320 608 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G135900 [exp] 130 / 2e-35 AT3G63010 537 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.002G213100 [exp] 127 / 2e-34 AT3G63010 578 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G073000 [exp] 121 / 2e-32 AT2G45600 352 / 2e-121 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G155800 [exp] 120 / 6e-32 AT5G06570 310 / 4e-105 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G113700 [exp] 113 / 5e-29 AT5G16080 358 / 3e-123 carboxyesterase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10029541 pacid=23149389 polypeptide=Lus10029541 locus=Lus10029541.g ID=Lus10029541.BGIv1.0 annot-version=v1.0 ATGTCCACCACAGGCCCTGCTGGTTCTGCCTTCGACTCCCAGCCGATCACGCCTCCTCCACCGCCGGCTGCCCTCCCTTGGACAACTCGTATCGCCGTTT CAGTGGTCTCCGCCTTATCCGATACTGTCCGCCGCCACGACGGCACTATCAACCGCCGTCTCCTCAACTTCCTCGATCTCAAGTCCCCTTCCTCTTCCAC TCCCATCCAATCCGTTGTCTCCTCCGACGTCACTGTCGATTCCTCTCGCAATTTATGGTTCCGCCTCTACACCCCCGCCGCCACCACCTATGCCAGTCTC CCGATCTTTGTTTTCTTCCACGGAGGAGGATTTGCCTTCCTCAGCGCCGCCAGCGTCGGCTATGACCTCGTTTGCCGCCGATTCGCCAGGACTCTCCCCG CCATCGTAGTTTCCGTCAACTACCGGCTTACACCGGAGCACCGATTCCCCTGCCAGTACGAAGACGGATTCGACATCCTCCGGTTCCTCGACGCGGACAA CAGCGGCGATCGGGATGCCTCGGTATTGCCACCGAGTGCGGACATAACAAAGTGCTTCCTCGCTGGAGACAGCGCCGGAGCAAATTTAGCGCACCACGTC GCGGTCAGGGCCGGACGGGCGGGCCACGGGAAATTCCGGAGGCTCCGGGTGGTTGGACAGGTGTCGATTCAGCCGTTCTTCGGAGGGGAAGAGAGATCGG AATCGGAGATCCGATTCGGAAGCAACTCGGTCCTAGTTTCTCTGCCGCGGACAGATTGGCTGGGGGGCCGCGGACAGATTGGCTGTGGAAGGCGTTCCTG CCGGAGGGGTCGACCCGGGACCATGAGGCGGCGAACGTGA
AA sequence Show only first row Show all	>Lus10029541 pacid=23149389 polypeptide=Lus10029541 locus=Lus10029541.g ID=Lus10029541.BGIv1.0 annot-version=v1.0 MSTTGPAGSAFDSQPITPPPPPAALPWTTRIAVSVVSALSDTVRRHDGTINRRLLNFLDLKSPSSSTPIQSVVSSDVTVDSSRNLWFRLYTPAATTYASL PIFVFFHGGGFAFLSAASVGYDLVCRRFARTLPAIVVSVNYRLTPEHRFPCQYEDGFDILRFLDADNSGDRDASVLPPSADITKCFLAGDSAGANLAHHV AVRAGRAGHGKFRRLRVVGQVSIQPFFGGEERSESEIRFGSNSVLVSLPRTDWLGGRGQIGCGRRSCRRGRPGTMRRRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10029541 [exp]	0	1
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10040783 [exp]	3.0	0.8449
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10009925 [exp]	9.9	0.8102
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10032157 [exp]	14.1	0.8122
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10003562 [exp]	14.3	0.7757
AT5G44860			unknown protein		Lus10036220 [exp]	16.9	0.8099
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10035105 [exp]	20.0	0.7794
AT4G09830			Uncharacterised conserved prot...		Lus10028732 [exp]	20.1	0.7589
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Lus10012843 [exp]	21.6	0.7847
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10017163 [exp]	22.4	0.8045
AT4G36830		HOS3-1	GNS1/SUR4 membrane protein fam...		Lus10018796 [exp]	22.5	0.7709

Compare expression of checked genes

Lus10029541 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.