Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33420 449 / 7e-160 Peroxidase superfamily protein (.1) AT5G42180 274 / 7e-91 PER64 peroxidase 64, Peroxidase superfamily protein (.1) AT5G51890 273 / 2e-90 Peroxidase superfamily protein (.1) AT3G03670 254 / 5e-83 Peroxidase superfamily protein (.1) AT4G36430 250 / 2e-81 Peroxidase superfamily protein (.1) AT5G40150 241 / 8e-78 Peroxidase superfamily protein (.1) AT4G11290 239 / 3e-77 Peroxidase superfamily protein (.1) AT1G05260 239 / 3e-77 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT4G16270 239 / 7e-77 Peroxidase superfamily protein (.1) AT5G05340 238 / 7e-77 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031664 [exp] 268 / 1e-88 AT5G51890 453 / 1e-161 Peroxidase superfamily protein (.1) Lus10017288 [exp] 266 / 9e-88 AT5G42180 462 / 4e-165 peroxidase 64, Peroxidase superfamily protein (.1) Lus10027405 [exp] 265 / 3e-87 AT5G51890 448 / 2e-159 Peroxidase superfamily protein (.1) Lus10005614 [exp] 265 / 4e-87 AT5G42180 461 / 6e-165 peroxidase 64, Peroxidase superfamily protein (.1) Lus10034547 [exp] 258 / 1e-84 AT5G42180 471 / 7e-169 peroxidase 64, Peroxidase superfamily protein (.1) Lus10010634 [exp] 256 / 2e-83 AT1G44970 449 / 5e-159 Peroxidase superfamily protein (.1) Lus10028736 [exp] 249 / 3e-81 AT1G05260 266 / 4e-88 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10018374 [exp] 243 / 1e-78 AT3G01190 414 / 4e-146 Peroxidase superfamily protein (.1) Lus10028688 [exp] 243 / 2e-78 AT4G11290 265 / 5e-87 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G134800 [exp] 457 / 6e-163 AT4G33420 457 / 3e-163 Peroxidase superfamily protein (.1) Potri.T045500 [exp] 440 / 2e-156 AT4G33420 441 / 9e-157 Peroxidase superfamily protein (.1) Potri.018G136900 [exp] 437 / 4e-155 AT4G33420 451 / 1e-160 Peroxidase superfamily protein (.1) Potri.005G108900 [exp] 279 / 5e-93 AT5G42180 442 / 2e-157 peroxidase 64, Peroxidase superfamily protein (.1) Potri.015G003500 [exp] 255 / 2e-83 AT1G05260 291 / 1e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.015G003600 [exp] 255 / 3e-83 AT1G05260 285 / 6e-95 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.005G195600 [exp] 254 / 1e-82 AT1G71695 460 / 4e-163 Peroxidase superfamily protein (.1) Potri.013G154400 [exp] 253 / 1e-82 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1) Potri.002G065300 [exp] 253 / 5e-82 AT1G71695 468 / 2e-166 Peroxidase superfamily protein (.1) Potri.016G132700 [exp] 251 / 5e-82 AT5G05340 367 / 2e-127 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10029543 pacid=23149412 polypeptide=Lus10029543 locus=Lus10029543.g ID=Lus10029543.BGIv1.0 annot-version=v1.0 ATGGGGGCGAAACTGGGCGCCAAAGAGACGATCCTGCTGGTCCTTGTGACGATGGTGGTGATGAGCAGCGCAGGGTTCAACTTCAGACCACGGTTCGGAG CCGACGGACTAAGCATGCAGTACTACGTCATGAACTGCCCCATCGCTGACCAGATAGTCAAGGGGACAGTCAACGCCGCACTCCAGGCCGACCCCACCTT GGCGGCAGCACTTGTTAGGATGCACTTCCACGACTGCTTCATCCAAGGCTGCGACGCCTCCATTCTCCTAGACTCCACAAAGGACAACGCCGCGGAGAAA GATTCTCCGGCCAACCTCAGCTTGAGAGGCTACGAGGTCATTGATGATGCCAAGGATAAGCTTGAAGAGCAGTGCCCCGGTGTTGTCTCCTGCGCCGACA TCGTTGCCATGGCTGCCAGAGATGCTGTTTTCTTCGCTGGAGGGCCGGTGTATGAAATACCGAAGGGAAGAAAGGACGGGAAGAGGTCGAAAATAGAGGA CACGATCAATTTACCATTCCCGACTATGAATGCTTCGGAGCTCATCCGTACTTTTGGACAGCGTGGTTTCTCTGCCCAAGAGATGGTCGCCCTCTCCGGA GCGCACACACTAGGGGTGTCAAGGTGCTCGTCCTTCAAAAACCGTCTGAGCAACCCGGATCCCACCATGATTGACTCCACCTTCGCCCAGTCCCTTTCCA AGACTTGCACCGCCGGCGGGGACTCCGCCGAGCAGCCTTTCGACATGACCAGAAACAGCTTCGACAACCTCTACTTCAATACTCTCACCAAGAAATCTGG GCTGCTCTTCTCCGACCAAACCTTGTACTCCAACCCCAAGACCAGGACCGTCGTCAACGGCTACTCCTTCAACCAGGCCATGTTCTTTCTCGACTTCCAG CAGGCCATGGTAAAGATGGGTAACCTTGACGTTAAGCAAGGCTCTCAGGGCGAAGTTCGCCAGAATTGCCGCAGGATTAATTAA
AA sequence Show only first row Show all	>Lus10029543 pacid=23149412 polypeptide=Lus10029543 locus=Lus10029543.g ID=Lus10029543.BGIv1.0 annot-version=v1.0 MGAKLGAKETILLVLVTMVVMSSAGFNFRPRFGADGLSMQYYVMNCPIADQIVKGTVNAALQADPTLAAALVRMHFHDCFIQGCDASILLDSTKDNAAEK DSPANLSLRGYEVIDDAKDKLEEQCPGVVSCADIVAMAARDAVFFAGGPVYEIPKGRKDGKRSKIEDTINLPFPTMNASELIRTFGQRGFSAQEMVALSG AHTLGVSRCSSFKNRLSNPDPTMIDSTFAQSLSKTCTAGGDSAEQPFDMTRNSFDNLYFNTLTKKSGLLFSDQTLYSNPKTRTVVNGYSFNQAMFFLDFQ QAMVKMGNLDVKQGSQGEVRQNCRRIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33420			Peroxidase superfamily protein...		Lus10029543 [exp]	0	1
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10010203 [exp]	6.2	0.8920
AT1G64060		RBOHAP108, ATRB...	ARABIDOPSIS THALIANA RESPIRATO...		Lus10017527 [exp]	10.4	0.8545
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036929 [exp]	16.2	0.8642
AT5G67150			HXXXD-type acyl-transferase fa...		Lus10031148 [exp]	17.4	0.8642
AT2G39200		ATMLO12, MLO12	MILDEW RESISTANCE LOCUS O 12, ...		Lus10040388 [exp]	30.1	0.8509
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009657 [exp]	32.7	0.8599
AT2G26920			Ubiquitin-associated/translati...		Lus10026781 [exp]	35.6	0.8560
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Lus10039297 [exp]	38.5	0.8471
AT3G62270			HCO3- transporter family (.1)		Lus10009995 [exp]	43.0	0.8260
AT5G25265			unknown protein		Lus10005347 [exp]	48.5	0.8358

Compare expression of checked genes

Lus10029543 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.