Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63620 627 / 0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) AT1G64710 133 / 6e-35 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G77120 128 / 3e-33 ADH1, ATADH, ATADH1 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) AT5G43940 125 / 5e-32 PAR2, ATGSNOR1, HOT5, GSNOR, ADH2 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G42250 124 / 2e-31 Zinc-binding alcohol dehydrogenase family protein (.1) AT1G32780 123 / 3e-31 GroES-like zinc-binding dehydrogenase family protein (.1) AT1G22430 118 / 1e-29 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G24760 117 / 4e-29 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) AT4G22110 116 / 6e-29 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G22440 107 / 2e-25 Zinc-binding alcohol dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039625 [exp] 788 / 0 AT5G63620 655 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Lus10029759 [exp] 118 / 1e-29 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10042787 [exp] 117 / 5e-29 AT1G77120 674 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10010506 [exp] 117 / 6e-29 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10034042 [exp] 114 / 6e-28 AT1G77120 672 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10004786 [exp] 114 / 8e-28 AT1G22430 529 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10033241 [exp] 108 / 9e-26 AT1G32780 511 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1) Lus10000624 [exp] 106 / 4e-25 AT1G22440 514 / 0.0 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10031890 [exp] 104 / 1e-24 AT5G24760 566 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G138700 [exp] 670 / 0 AT5G63620 644 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Potri.T010600 [exp] 665 / 0 AT5G63620 646 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Potri.019G041500 [exp] 135 / 6e-36 AT1G22430 308 / 1e-102 GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.011G152900 [exp] 134 / 3e-35 AT1G32780 545 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1) Potri.007G108701 [exp] 134 / 3e-35 AT1G77120 656 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.019G041600 [exp] 131 / 3e-34 AT1G22430 300 / 3e-99 GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.002G072100 [exp] 130 / 4e-34 AT1G77120 645 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.014G193800 [exp] 129 / 1e-33 AT5G43940 684 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.002G254900 [exp] 129 / 1e-33 AT5G43940 694 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.011G152800 [exp] 130 / 2e-33 AT1G32780 540 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Lus10029549 pacid=23149415 polypeptide=Lus10029549 locus=Lus10029549.g ID=Lus10029549.BGIv1.0 annot-version=v1.0 ATGGGATTATCTCGTTTTCTCCGCAGCGTGATCGCCGATGCTTCCAAACACATATCTTCCAAATCCAACCCACGCTTCCTCACCACCGCCGCGCCCTCCA TCGCCTCTTATCACATTAGCTCCGGTAGCTTCATGCGTGGAGTCGTCTTTTGGGATTCTTCCAGACCGATTTCCATCGAAGAATTCCATATCCCTCGCCC CAAAGCTGGAGAACTTCTCATCAAGACCAAAGGTTGTGGAGTTTGTCACTCTGATCTCCATGTTATAAAGGGTGAGCTCTCATTTCCTAGCCCTTGTGCT ATTGGCCACGAAATCACCGGCGAAGTCGTCGAGCATGGTCCCATGACTGACTCCAAGATTATCCATAGGCTTCCTGTTGGATCTAATGTCATTGGAGCGT TCATAATGCCATGTGGTAACTGCTTCTACTGCTCAAAGGGCCACGATGATTTATGTGAGGACTTCTTTGCTTATAACCGGGCTAAAGGAACTCTCTATGA TGGCGAAACTCGCCTTTTCCTCCGGGGCAGTGGTAAGCCGATATTCATGTACAGCATGGGAGGCCTTGCTGAGTACTGCGTTGTCCCTGCACATGCATTA ACGACTTTACCAGATACATTGCCATTTACCGAGTCTGCAATCTTAGGGTGTGCTGTGTTTACTGCGTATGGTGCGATGGCACATGCTGCTGAGGTGCGTC CTGGAGATTCAGTTGCTGTAATTGGAGTTGGGGGTGTTGGCTCAAGTTGTTTGCAGATAGCAAGGGCATTTGGGGCCTCTGATATCATTGCCGTTGATGT TCAGGATGATAAATTAGAGAAGGCCAAGATTTTTGGGGCTACACATACTGTAAATGCAGTAAAGGAGGATCCGGTTGAAAAGATCAGGGAAATAACTGGG GGACGAGGGGTGGACGTTGCAGTGGAAGCCTTGGGAAAACCACTCACATTTTCTCAGTGCACCAGAAGTGTAAGAGATGGTGGGAAAGCTGTGATGATTG GACTTGCAAAAGCTGGTTCGGTTGGGGAGATGGACATTAATCATTTAGTTCGTCGAAAGATCCAAGTGATTGGTTCGTATGGAGGAAGGGCGAGACAAGA TCTTCCAAAGCTGGTAAGACTTGCAGAAACGGGTATTTTCAACCTCAAAGACGCCGTATCCAGGAAGTATAAGTTTGAGGAGGCAGGGGCAGCATTTCAG GATCTCAACGAGGGGAAGATTATTAGCCGAGCTGTTGTTGAGATAATGTAG
AA sequence Show only first row Show all	>Lus10029549 pacid=23149415 polypeptide=Lus10029549 locus=Lus10029549.g ID=Lus10029549.BGIv1.0 annot-version=v1.0 MGLSRFLRSVIADASKHISSKSNPRFLTTAAPSIASYHISSGSFMRGVVFWDSSRPISIEEFHIPRPKAGELLIKTKGCGVCHSDLHVIKGELSFPSPCA IGHEITGEVVEHGPMTDSKIIHRLPVGSNVIGAFIMPCGNCFYCSKGHDDLCEDFFAYNRAKGTLYDGETRLFLRGSGKPIFMYSMGGLAEYCVVPAHAL TTLPDTLPFTESAILGCAVFTAYGAMAHAAEVRPGDSVAVIGVGGVGSSCLQIARAFGASDIIAVDVQDDKLEKAKIFGATHTVNAVKEDPVEKIREITG GRGVDVAVEALGKPLTFSQCTRSVRDGGKAVMIGLAKAGSVGEMDINHLVRRKIQVIGSYGGRARQDLPKLVRLAETGIFNLKDAVSRKYKFEEAGAAFQ DLNEGKIISRAVVEIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63620			GroES-like zinc-binding alcoho...		Lus10029549 [exp]	0	1
AT5G63620			GroES-like zinc-binding alcoho...		Lus10039625 [exp]	1.0	0.9061
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10006698 [exp]	12.6	0.8714
AT5G16340			AMP-dependent synthetase and l...		Lus10013772 [exp]	15.0	0.8669
					Lus10025501 [exp]	17.1	0.8671
AT4G34660			SH3 domain-containing protein ...		Lus10028783 [exp]	21.5	0.8375
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Lus10013994 [exp]	25.2	0.8668
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10027283 [exp]	26.8	0.8408
AT4G20930			6-phosphogluconate dehydrogena...		Lus10038545 [exp]	30.6	0.8341
AT3G53140			O-methyltransferase family pro...		Lus10023892 [exp]	32.3	0.8655
AT2G37840			Protein kinase superfamily pro...		Lus10022593 [exp]	34.9	0.8445

Compare expression of checked genes

Lus10029549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.