Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08630 258 / 2e-76 DDT domain-containing protein (.1) AT5G44180 50 / 4e-06 HD Homeodomain-like transcriptional regulator (.1.2) AT4G12750 49 / 8e-06 Homeodomain-like transcriptional regulator (.1) AT1G28420 48 / 2e-05 HD HB-1 homeobox-1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039626 [exp] 585 / 0 AT5G08630 633 / 0.0 DDT domain-containing protein (.1) Lus10004282 [exp] 372 / 4e-120 AT5G08630 645 / 0.0 DDT domain-containing protein (.1) Lus10025454 [exp] 51 / 3e-06 AT1G28420 1275 / 0.0 homeobox-1 (.1) Lus10015325 [exp] 51 / 4e-06 AT1G28420 1273 / 0.0 homeobox-1 (.1) Lus10018634 [exp] 50 / 7e-06 AT5G44180 1391 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Lus10039870 [exp] 50 / 9e-06 AT5G44180 1398 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Lus10012302 [exp] 49 / 2e-05 AT4G12750 911 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10016078 [exp] 47 / 4e-05 AT4G12750 723 / 0.0 Homeodomain-like transcriptional regulator (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G008541 [exp] 539 / 0 AT5G08630 683 / 0.0 DDT domain-containing protein (.1) Potri.004G138900 [exp] 335 / 8e-106 AT5G08630 652 / 0.0 DDT domain-containing protein (.1) Potri.017G016200 [exp] 62 / 9e-10 AT5G44180 1322 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.007G135500 [exp] 56 / 8e-08 AT5G44180 1226 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.011G057700 [exp] 55 / 2e-07 AT1G28420 1262 / 0.0 homeobox-1 (.1) Potri.004G048675 [exp] 55 / 2e-07 AT1G28420 1266 / 0.0 homeobox-1 (.1) Potri.014G173300 [exp] 53 / 7e-07 AT4G12750 1038 / 0.0 Homeodomain-like transcriptional regulator (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10537 [flax] [poplar] WAC_Acf1_DNA_bd ATP-utilising chromatin assembly and remodelling N-terminal
Representative CDS sequence Show only first row Show all	>Lus10029550 pacid=23149453 polypeptide=Lus10029550 locus=Lus10029550.g ID=Lus10029550.BGIv1.0 annot-version=v1.0 ATGCCTTTGCTGAAAAAAACGTCATTTCCTTTGGCGGATCCTCCTCGGGATTTAGAGCCAGAAGACCTAGTATACCAAGTTCGATTTACCAAAGAAATTT TCCATGATTATCATGGAAAAGCTAACTTGACGTACGAAGAAGCCCTAGTTTCTGAGAAGCATGCCACAGAAAAAGTTCAAGGGATACCTGAAGTCCTAGT GGAGCCTGCACTGCGTGTCATACAATTTAGTACACTTTCTCTCAAAGATCTTGCGGACACAATAGGGGTCAAATTGCACGAATACAAGTTTGTAGGGGAT GAATTGCACGCAAAAAAAGGAGGGAATGTCTTCCCTTGCAAAATACTAAAATTTCTGGAAGACAGTAATGGTAAAACTCGTTACGAGATAATATGGCTAG ACAAAAATAAGAAGGCTAGGGACACTTCAGCGGTAAATGAGGATGAGCTGATAAGGAAGAAGAAACCTTGTAGTAGAGAGGTTTTGAAGTCTTTTATTCG GGAATCCACATACCGCAGAGATCCTTGGGTGCTTCATGAGCAGTTGGCTAGGAAACATGGCATCTCAAATGATCCACCAAAGGAGTTAAAAGACAGAGTT TTTGTCCATAATGGAGTAGTCTGTGATAAGAAGAGGAAAAGTGCTGGGGAAGGAGACGAAGGAGGAAAGTGTAAAAAGAGGAAAGGCGCAGATGAAAGCA ACGGCAGAAGAGAACATAAGCAGGCGGAGCCTATCAACTATCCAATTGATGATCTTTTAGTGCAACCAGCTGTAGATGATCAAGCCTTAATCGAACGCCC TTTACCTTCAAGGGGTTTTGATGTCCCTATGGATTCCGTTGGAGATCTTTTAATGATAACATTGGTTACCTGGACAGAATATCTTTGCGATTTCATAGAA ATGGTTGGCATTCCTGGTTTATCAGCATCAACATCAACTATTAAACGAGGACATTATGGCCTCTTAGATGTTCAAGTCAAACTAGGAATCTTACGGGAAT TGGTCAATGAAACGGTTGAAACAGTTCTTTTCAGAAAGAAAATAGATGAATATGTTGAACAGAGACAGGTGCTTGGAGCCACATTCAGAGGGGAGGCTCT TGAAGAAGCTAGAAGAATAAGAGAAGAGAAAGAACGATTGAAGGCTGAAGATGTTGCTAATGGAGCAAGTAATGGACATTTTCCAGTTGAGGCTGAGGAT ATACAATGCAATCAGGATGCCACTGTCAATAAGAACAATGATAAAAACAGCGAGGTACTGAGAAAACATAAGGGGGGGGCGATCTCTTCTGAAGAAGACA GTAATGCATCAGACAGAAGTGACGACAGCCATTCTGAGACTGCATCAAAGAAAATGGGTAAAAGGCAGAACAAGGAAATTCTTACAGGGACAGGCGAAGA TGCGGCAAACCAAATGAAGGATAAAAAGAAAGGACCTGCAGAAATGAAGACCAAAGACCAAAGGAAAGAACAGTTTGATCGGGAGATGGAGAAGCGAGTG ATACGCACTGAACCATTGGGTAAAGACAGACATTATAACAGATATTGGTGGTTCCGGCGTGATGGAAGGATGTTTGTTGAGAGTTCTGATTGCAAAGAGT GGGGCTACTATAGCAGCAAAGAAGAGCTCAATGCATTGATGGGTTCACTGAACCTTAAGGGTGAGAGAGAGAAGGCTCTTCAGAAGGAGCTAGAGAAATT GTACAGCAGAATTTGTGCGGAACTGCAAAAGAGGTCTAACAAATTGGCTGATGAAATTGCAATGGAGGAAACAGTGGTTAGGAGATCTACACGTGTACGG GCTATACCGAGAGAAAACTCAGCAAACTCGTGCCTTAGATATGTTAATAAGTGGAAGGTAGACTAA
AA sequence Show only first row Show all	>Lus10029550 pacid=23149453 polypeptide=Lus10029550 locus=Lus10029550.g ID=Lus10029550.BGIv1.0 annot-version=v1.0 MPLLKKTSFPLADPPRDLEPEDLVYQVRFTKEIFHDYHGKANLTYEEALVSEKHATEKVQGIPEVLVEPALRVIQFSTLSLKDLADTIGVKLHEYKFVGD ELHAKKGGNVFPCKILKFLEDSNGKTRYEIIWLDKNKKARDTSAVNEDELIRKKKPCSREVLKSFIRESTYRRDPWVLHEQLARKHGISNDPPKELKDRV FVHNGVVCDKKRKSAGEGDEGGKCKKRKGADESNGRREHKQAEPINYPIDDLLVQPAVDDQALIERPLPSRGFDVPMDSVGDLLMITLVTWTEYLCDFIE MVGIPGLSASTSTIKRGHYGLLDVQVKLGILRELVNETVETVLFRKKIDEYVEQRQVLGATFRGEALEEARRIREEKERLKAEDVANGASNGHFPVEAED IQCNQDATVNKNNDKNSEVLRKHKGGAISSEEDSNASDRSDDSHSETASKKMGKRQNKEILTGTGEDAANQMKDKKKGPAEMKTKDQRKEQFDREMEKRV IRTEPLGKDRHYNRYWWFRRDGRMFVESSDCKEWGYYSSKEELNALMGSLNLKGEREKALQKELEKLYSRICAELQKRSNKLADEIAMEETVVRRSTRVR AIPRENSANSCLRYVNKWKVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08630			DDT domain-containing protein ...		Lus10029550 [exp]	0	1
AT4G15950		RDM2, NRPE4, NR...	RNA-DIRECTED DNA METHYLATION 2...		Lus10038766 [exp]	3.5	0.8737
AT5G06210			RNA binding (RRM/RBD/RNP motif...		Lus10013306 [exp]	4.2	0.8603
AT1G26750			unknown protein		Lus10031376 [exp]	6.3	0.8184
AT5G09250		KIWI	ssDNA-binding transcriptional ...		Lus10039207 [exp]	7.5	0.7981
AT5G56670			Ribosomal protein S30 family p...		Lus10028808 [exp]	7.7	0.8228
AT1G77610			EamA-like transporter family p...		Lus10018189 [exp]	7.8	0.7632
AT2G21950		SKIP6	SKP1 interacting partner 6 (.1...		Lus10030606 [exp]	8.0	0.8105
AT4G17085			Putative membrane lipoprotein ...		Lus10042735 [exp]	8.1	0.7834
AT1G77280			Protein kinase protein with ad...		Lus10024154 [exp]	8.7	0.7776
AT3G14080			Small nuclear ribonucleoprotei...		Lus10008124 [exp]	9.5	0.8271

Compare expression of checked genes

Lus10029550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.