Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22620 714 / 0 Rhamnogalacturonate lyase family protein (.1.2) AT4G37950 650 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G09910 612 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G09890 605 / 0 Rhamnogalacturonate lyase family protein (.1) AT4G38030 603 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G09880 596 / 0 Rhamnogalacturonate lyase family protein (.1) AT4G24430 592 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G65210 192 / 1e-57 Galactose-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039627 [exp] 1047 / 0 AT2G22620 785 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10004281 [exp] 856 / 0 AT2G22620 818 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10019231 [exp] 832 / 0 AT2G22620 800 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10012720 [exp] 620 / 0 AT2G22620 706 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10028212 [exp] 612 / 0 AT1G09890 981 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10005979 [exp] 563 / 0 AT1G09880 767 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10000684 [exp] 551 / 0 AT1G09910 842 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10023106 [exp] 545 / 0 AT2G22620 611 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10030233 [exp] 541 / 0 AT4G24430 776 / 0.0 Rhamnogalacturonate lyase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G218500 [exp] 808 / 0 AT2G22620 842 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.014G004500 [exp] 739 / 0 AT2G22620 807 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.005G151500 [exp] 628 / 0 AT1G09910 979 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110000 [exp] 627 / 0 AT1G09890 968 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110100 [exp] 624 / 0 AT1G09890 810 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110200 [exp] 604 / 0 AT1G09890 892 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110300 [exp] 600 / 0 AT4G24430 929 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.011G006200 [exp] 510 / 9e-176 AT1G09910 663 / 0.0 Rhamnogalacturonate lyase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF06045 [flax] [poplar] Rhamnogal_lyase Rhamnogalacturonate lyase family
Representative CDS sequence Show only first row Show all	>Lus10029552 pacid=23149371 polypeptide=Lus10029552 locus=Lus10029552.g ID=Lus10029552.BGIv1.0 annot-version=v1.0 ATGCAAGATGAGGACCAAGTTGAAGTTTCCTTCACCAAGAAATGGAGTCCTTCCGATGATACAGTCCCCTTAAATATAGACAAAAGGTATATATTACGGA GGGGCTGCTCAGGGATTTACATGTACACAATCCTGGAACGCCTCCAAGGATGGCCTGATGTTGATATGGACCAAATCAGAGTTGTTTTCAAGCTCCAGCA GAAGCTGTTTAATTACATGGCGATATCAGATTACAAGCAAAGGGTGATGCCGATGCCCGAGGATCGGGTCACTGGCCAGCGATTAGCTTACCCTGAAGCT GTTCTCTTGACCCATCCCATCAATCCTGACCTTAGAGGCGAGGTGGATGACAAGTATCAGTACTCGTGCGAGGACAAGGACAACAAGGTTCATGGATGGA TATCAGAGGATCCTGCAGTGGGATTCTGGATGATCACTCCCAGTAATGAGTTTCGAGTTGGAGGACCGGTCAAGCAGGATCTCACCTCCCATGTCGGCCC AATTGTTCTCAATATGTTCACTAGCACTCATTACGCTGGGAAAGACTTGAATACTGCATATAGAAACGGAGAGCCGTGGAAGAAAGTCATTGGCCCGGTT TTTGTTTACCTGAACTCGGGAGATACTTCAACATTATGGCGAGATGCTAAGCAACAGATGCATGCGGAGGTAAAGAGCTGGCCGTATGACTTTGTTAACT CGGAAGAGTTTCCTACAGCACTTCAACGAGGAAGTGTTGTCGGCCAGTATATCAATGAGAGATTGATGTATGCTGCATCAGCATATGTTGGGTTAGCCTT GCCAGGAGAAGTGGGATCATGGCAGACAGATGCCAAGGGGTATCAATTCTGGACTCAAGCTGACAGGAGAGGTAGGTTCTTCATTGATAACGTCAGAATT GGAACCTACAGTTTGTATGCTTGGGTTCCTGGAGTCATTGGGGACTACAAGTACAGAGTTAATATCACAATTCAACCTGGATCAAAGATCGACTTGGGTA TGCTTCTTTACGACCCACCAAGGAACGGTCCAACTATCTGGGAAATATGCATTCCTGACAGGAAAGCTGCTGAATTCCATGTCCCGGACGCATACCCTAC ACTAATGAATAAATTGTTCAGACAGTATGGATTGTGGTCGCGATACGCTGATATATATCCAAGACAGGATCTTGTGTATGAAGTTGGAGTCAGCAATTTC TTTGAAGACTGGTTCTTTGCTCATGTTTCAAGAAACGTAGGAAACAACACATTCCGAGCAACCACTTGGAAGATTAACTTTGATCTAACAACTGTGGACA AAACTGGAGACTACACACTCCAATTAGCATTGGCTTCAGCCACTGCATCAGAGCTTCAGGTCCGGTTTAACAACCCAAATTCAAGAGAACCGTTGTTCAC GACAGGGCTGATAGGAAGAGATAATGCCATAGCAAGACATGGAATCCATGGTTTGTACTGGTTGTACAGCATCAGTGTACCCAGCAATCAACTTGTTGAT GGGAAAAACTCGATTTATCTGACTCAAACGAAATCTGACGGCCCGTTTCACGGAGTTATGTATGATTACATTCGGTTAGAAGGGCCTCGAGGAATTTAA
AA sequence Show only first row Show all	>Lus10029552 pacid=23149371 polypeptide=Lus10029552 locus=Lus10029552.g ID=Lus10029552.BGIv1.0 annot-version=v1.0 MQDEDQVEVSFTKKWSPSDDTVPLNIDKRYILRRGCSGIYMYTILERLQGWPDVDMDQIRVVFKLQQKLFNYMAISDYKQRVMPMPEDRVTGQRLAYPEA VLLTHPINPDLRGEVDDKYQYSCEDKDNKVHGWISEDPAVGFWMITPSNEFRVGGPVKQDLTSHVGPIVLNMFTSTHYAGKDLNTAYRNGEPWKKVIGPV FVYLNSGDTSTLWRDAKQQMHAEVKSWPYDFVNSEEFPTALQRGSVVGQYINERLMYAASAYVGLALPGEVGSWQTDAKGYQFWTQADRRGRFFIDNVRI GTYSLYAWVPGVIGDYKYRVNITIQPGSKIDLGMLLYDPPRNGPTIWEICIPDRKAAEFHVPDAYPTLMNKLFRQYGLWSRYADIYPRQDLVYEVGVSNF FEDWFFAHVSRNVGNNTFRATTWKINFDLTTVDKTGDYTLQLALASATASELQVRFNNPNSREPLFTTGLIGRDNAIARHGIHGLYWLYSISVPSNQLVD GKNSIYLTQTKSDGPFHGVMYDYIRLEGPRGI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10029552 [exp]	0	1
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10001210 [exp]	10.0	0.9350
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Lus10031146 [exp]	10.5	0.9336
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10011202 [exp]	11.8	0.9231
AT3G61850	DOF	DAG1, AtDof3,7	dof affecting germination 1, D...		Lus10012619 [exp]	12.0	0.8902
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10004704 [exp]	14.0	0.9238
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10014498 [exp]	15.2	0.9296
AT4G27290			S-locus lectin protein kinase ...		Lus10038552 [exp]	17.2	0.9277
AT1G47530			MATE efflux family protein (.1...		Lus10026323 [exp]	18.2	0.9176
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10006353 [exp]	21.2	0.9233
AT5G16180		CRS1, ATCRS1	ARABIDOPSIS ORTHOLOG OF MAIZE ...		Lus10017618 [exp]	21.5	0.9145

Compare expression of checked genes

Lus10029552 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.