Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10530 575 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 505 / 1e-171 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 330 / 1e-103 Concanavalin A-like lectin protein kinase family protein (.1) AT5G06740 324 / 1e-101 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 317 / 1e-98 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 315 / 6e-98 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 311 / 9e-97 RLK receptor lectin kinase (.1) AT1G70110 310 / 4e-96 Concanavalin A-like lectin protein kinase family protein (.1) AT5G03140 304 / 1e-93 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 302 / 4e-93 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029554 [exp] 1107 / 0 AT5G10530 590 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016836 [exp] 727 / 0 AT3G16810 761 / 0.0 pumilio 24 (.1) Lus10016833 [exp] 711 / 0 AT5G10530 575 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004277 [exp] 604 / 0 AT5G10530 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029555 [exp] 589 / 0 AT5G10530 687 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004279 [exp] 488 / 2e-164 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020446 [exp] 471 / 2e-157 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020456 [exp] 453 / 8e-151 AT5G10530 519 / 1e-176 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007077 [exp] 457 / 5e-150 AT5G10530 511 / 4e-171 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G094700 [exp] 655 / 0 AT5G10530 764 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004500 [exp] 620 / 0 AT5G10530 725 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004300 [exp] 615 / 0 AT5G10530 743 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004400 [exp] 612 / 0 AT5G10530 738 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 531 / 0 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 492 / 4e-166 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 479 / 3e-161 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G284200 [exp] 473 / 6e-160 AT5G10530 441 / 8e-148 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283204 [exp] 472 / 3e-159 AT5G10530 472 / 3e-159 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283866 [exp] 398 / 1e-129 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10029553 pacid=23149410 polypeptide=Lus10029553 locus=Lus10029553.g ID=Lus10029553.BGIv1.0 annot-version=v1.0 ATGGCGTTTCTTATCTTTGAACTATTCTTCCTATTCTTTTGTCTTCTCCTTCCCCTCGCAGCTCCATTGACTTTCAACAAATCCAGATTCGACCAAGACG ACACCTCCATACTCTGTAGCGGAGGCGCCGCCGCAAGCTCCGGCACCGTCAAATTGACCAATTCCCACTACGGAATCGAAGTCAGCCGCGTCACATACGA CGACGATATCCAACTCTGGGATTCCACCACTGGTAAACTCTCCGATTTCACCACCCACTTTTCCTTCTCCATCAGCAGAGACAACACCAGGTACTACCCT TCCGGGATCGCCTTCTTCCTCGCTCCGGTAGGGTTCCAGACGCCCGAAAATTCTGCCGGCGGGTACATGGGTCTCTACAACTACACCGATAGAGTGCATC CTCTTCCACCGCCCGGGAAACGCGTCGTTCATGTGGAATTCGATTACTTCGTAAACTCCGCTTGGGATCCACCGTACCAGCACGTGGGAATCAACAACAA TTCTCTAACCTCCGCTGCGTTCGAGCAATGGATTTCCGATCCGCATCCCGGCCATCCGATTGTCGTCGAGATCAGTTACTCGGCCAGCACCCACAATCTC ACAGCCTCCTGGGATTACGCGAATAGCAGGACTTGGAGCCTATGGTATGTGATTGATTTGAGCAAGGTTCTTCCGGAGAAGGTGATGATGGGGTTTACAG CAACCTCAAATGATTTCTCAGGGGAGCAGGAACTTCTGTCGTGGGATTTCGCTTCTGATCTGGAGACGAGAGAAAGTAATTCACTGAAGAAGAAGAATAA GAAACTGATGGGTATTGTTGCGTTACTAACAGGGATTGCCATAACTGCCAACTTGACTGCTTACTGTTTTCTAAAGATAAGGAAGAGGAAATTAGTAGAG AAAGAAAACAGTATGAGTGATGATTTCTTAAGAGGAGCTGGAGCTGGTCCTAGGAGATTCTGTTACAGTGATCTGGTATCAGCTACAAACAACTTCTCAC TCGATTGGAAATTAGGGGAAGGGGGTTTCGGTTCGGTTTACAAAGGATACATCACAGATTATTTTGGTACGCTACCAGTTGCTGTCAAGAGGACCTCCAA GGGTTTGAGGCAAGGGGTCGAGGAGTACATTACTGAAGTGATGATCATCAGCCGCCTAAGGCATCGGAATCTTGTTCAACTCATCGGCTGGTGCCACGAC AAATCCGAACTGTTGCTCGTTTATCAGTTTATGCCGAATGGTAGTCTAGACACTCACCTCTTTGGCAATGAATCATCATGTCCTATTATTCCATGGCCTG TAAGGTATAAAATAGTTATGGGTTTGGCTTATGCATTGCTGTATCTTCACCACGAATGGGACCAATGCATTGTTCACCGGGACATCAAAGCGGCTAACAT TATGCTAGACTCCAACTTCAATGTCAAGCTTGGGGATTTCGGGTTGGCTCGATTGGTTGATCACGAACGGCTTATAACTAAAACTACGAAGGTGGCTGGA ACAATTGGGTACATGTCTCCAGAGTATATCAGCACGGGAAGGGCTAGCAAGGAGTCGGATGTGTTCAGCTTTGGGGTTGTTTGTTTGGAGATTGCTACGG GGAGGAGGGTCGTTGATTACATCGAACCTGGATTGGAAATGGGTTTTGTGGAGTGGGTTTGGGATCTGTATGGAACTGGGAAACTCAAGATGGCTATTGA TAGGAGGCTCATAGACTTCGACGAGAAGGAGATGGAATGTTTGATGGTTGTGGGTCTTTGGTGTGCTCATCCTGATTCTGCACAGAGAGCATCAATAAGG CATGCAATTCAAGTGCTGAAATTTGAAGCTGCACTGCCAATTCTTCCGGAGAAGAAACCAGTTCCTGTGTTTGCTGTACATTTAATTGATAGTGTTGATA TTCTGGATGCTAGTTTTGATTGTTCAGATGAACCTCTGATTTCAGATTTGATTAGTCATTCGGCAGATAGTTTTTAA
AA sequence Show only first row Show all	>Lus10029553 pacid=23149410 polypeptide=Lus10029553 locus=Lus10029553.g ID=Lus10029553.BGIv1.0 annot-version=v1.0 MAFLIFELFFLFFCLLLPLAAPLTFNKSRFDQDDTSILCSGGAAASSGTVKLTNSHYGIEVSRVTYDDDIQLWDSTTGKLSDFTTHFSFSISRDNTRYYP SGIAFFLAPVGFQTPENSAGGYMGLYNYTDRVHPLPPPGKRVVHVEFDYFVNSAWDPPYQHVGINNNSLTSAAFEQWISDPHPGHPIVVEISYSASTHNL TASWDYANSRTWSLWYVIDLSKVLPEKVMMGFTATSNDFSGEQELLSWDFASDLETRESNSLKKKNKKLMGIVALLTGIAITANLTAYCFLKIRKRKLVE KENSMSDDFLRGAGAGPRRFCYSDLVSATNNFSLDWKLGEGGFGSVYKGYITDYFGTLPVAVKRTSKGLRQGVEEYITEVMIISRLRHRNLVQLIGWCHD KSELLLVYQFMPNGSLDTHLFGNESSCPIIPWPVRYKIVMGLAYALLYLHHEWDQCIVHRDIKAANIMLDSNFNVKLGDFGLARLVDHERLITKTTKVAG TIGYMSPEYISTGRASKESDVFSFGVVCLEIATGRRVVDYIEPGLEMGFVEWVWDLYGTGKLKMAIDRRLIDFDEKEMECLMVVGLWCAHPDSAQRASIR HAIQVLKFEAALPILPEKKPVPVFAVHLIDSVDILDASFDCSDEPLISDLISHSADSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10530			Concanavalin A-like lectin pro...		Lus10029553 [exp]	0	1
AT5G15870			glycosyl hydrolase family 81 p...		Lus10021987 [exp]	1.0	0.9021
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Lus10037448 [exp]	3.2	0.8769
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Lus10013186 [exp]	4.9	0.8682
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10039562 [exp]	6.3	0.8569
AT1G75810			unknown protein		Lus10033134 [exp]	6.5	0.8555
AT5G02090			unknown protein		Lus10024357 [exp]	6.6	0.8606
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10024177 [exp]	6.7	0.8496
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Lus10005419 [exp]	8.4	0.8210
AT5G17280			unknown protein		Lus10028356 [exp]	9.5	0.8209
AT1G08315			ARM repeat superfamily protein...		Lus10024145 [exp]	9.9	0.8253

Compare expression of checked genes

Lus10029553 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.