Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10530 565 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 371 / 2e-119 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 322 / 1e-100 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 301 / 5e-93 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 301 / 1e-92 RLK receptor lectin kinase (.1) AT5G03140 300 / 4e-92 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 299 / 8e-92 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 298 / 2e-91 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70110 295 / 3e-90 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53380 295 / 8e-90 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029553 [exp] 1087 / 0 AT5G10530 591 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016836 [exp] 706 / 0 AT3G16810 761 / 0.0 pumilio 24 (.1) Lus10016833 [exp] 670 / 0 AT5G10530 575 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029555 [exp] 599 / 0 AT5G10530 687 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004277 [exp] 598 / 0 AT5G10530 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004279 [exp] 491 / 2e-165 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020446 [exp] 455 / 2e-151 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007077 [exp] 454 / 7e-149 AT5G10530 511 / 4e-171 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033783 [exp] 403 / 5e-131 AT5G10530 468 / 2e-156 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G094700 [exp] 637 / 0 AT5G10530 764 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004500 [exp] 600 / 0 AT5G10530 725 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004300 [exp] 588 / 0 AT5G10530 743 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004400 [exp] 587 / 0 AT5G10530 738 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 521 / 1e-177 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G284200 [exp] 469 / 1e-158 AT5G10530 441 / 8e-148 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 394 / 1e-127 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283866 [exp] 394 / 1e-127 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283212 [exp] 390 / 2e-126 AT5G10530 385 / 3e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283204 [exp] 387 / 3e-126 AT5G10530 472 / 3e-159 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10029554 pacid=23149408 polypeptide=Lus10029554 locus=Lus10029554.g ID=Lus10029554.BGIv1.0 annot-version=v1.0 ATGGCAGTAACCCCTCCTCCTACTTCACTTGTATTCTTCCTACTCTTCTATCATCTCCTCCCCCCAGCAGCTCCATTGACTTTCAACAAATCCAGATTCG ACCAAGACGACACCTCCATAATCTGCAGCGGAGGCGCCGCCGTAAGCTCCGGTACCATCAAATTGACAAGGTCCCACTACGGAATGGAAGTCAGCCACGT CACATACGACGGCGAGATCCCACTCTGGGATTCCACCACCGGCAAACTCTCCGATTTCACTACCCACTTCTCCTTCTCCATCACCGCAGACGACACCAGG CACTACCCTTCCGGGATCGCCTTCTTCCTCGCTCCTGTAGGGTTCCAGACGCCCGAAAATTCCGCCGGTGGGTACATTGGTCTATACAACAACACCGACA GAGTGTATCTTTCTCCACCGGGGAAACGCATCGTTCACGTGGAATTCGATTACTGGGTGAACCCTGCTTGGGATCCGCCGTACCAGCACGTGGGAATCAA CAACAATTCTCTAACCTCCGCTGCGTGGGAGCAATGGATTTCTGATCCGCCTTCCGGCCATCCGATTCTCGTCGAGATAAGTTACTCGGCCAGCACCCAC AATCTCACTGTCTCCTGGGTGTACGAGAATAGTAGGACTTGGATTCTATGGTATGTGATTGATTTGAGTAAGGTTCTCCCGGAGTTGGTGATAATGGGAT TTTCAGCAACCTGTAATGATTTTTCAGGTGAGCAAGAACTTCTGTCGTGGGATTTTACTTCTGATATTGAGATTAGAGAAAGTAGTTCCCTGAAGCAGCA GCAGAAGAAGAAATTGATGAGTATTGTTGCGTTAGTAGCAGGCATCGCCATAGCTGCCAACTTGACTGCTTACTGTTTTCTCAAGATATGGAATAAGAAG AAGAAGAAGAAGGGGAAATTAGTAGAAATGAGTATGAGTGATGAATTCTCAAGAGGAGCAGTCGCTGGTCCTAGGAGATTCTGTTACAGTGATCTGGTAT CAGCTACAAACAACTTCTCACTCGATTGGAAATTAGGGGAAGGGGGTTTCGGTTCGGTTTACAAAGGATACATCACAGATGATTTTGGTACGCTACCAGT TGCTGTCAAGAGGACCTCCAAGGGTTTGAGGCAAGGGGTCGAGGAGTACATTACTGAAGTGATGATCATCAGCCGCCTAAGGCATCGGAATCTTGTTCAA CTCATCGGCTGGTGCCACGACAAATCCGAACTGTTGCTCGTTTATCAGTTTATGCCGAATGGTAGTCTAGACACTCACCTCTTTGGCAATGAATCATCAT GTCCTATTATTCCATGGCCTGTAAGGTATAAAATAGTTATGGGTTTGGCTTATGCATTGCTGTATCTTCACCACGAATGGGACCAATGCATTGTTCACCG GGACATCAAAGCGGCTAACATTATGCTAGACTCCAACTTCAATGTCAAGCTTGGGGATTTCGGGTTGGCTCGATTGGTTGATCACGAACGGCTTATAACT AAAACTACGAAGGTGGCTGGAACAATTGGGTACATGTCTCCAGAGTATATCAGCACGGGAAGGGCTAGCAAGGAGTCGGATGTGTTCAGCTTTGGGGTTG TTTGTTTGGAGATTGCTACGGGGAGGAGGGTCGTTGATTACATCGAACCTGGATTGGAAATGGGTTTTGTGGAGTGGGTTTGGGATCTGTATGGAACTGG GAAACTCAAGATGGCTATTGATAGGAGGCTCATAGACTTCGACGAGAAGGAGATGGAATGTTTGATGGTTGTGGGGCTTTGGTGTGCTCATCCTGATTCT GTACAGAGAGCATCGATAAGACAGGCAATTCAAGTGCTGAAATTTGAAGCTGCATTGCCAATTCTTCCGGAGAAGAAACCTGTTCCTGTGTTTCCTGTAC ATGTACCTGATAGTACTGATAGTCTGGAGGCTAGTTTTGATTGTGCGGATGAACCTCTCATTTCAGGTTCAATTAATGATTCGGAAAGATAG
AA sequence Show only first row Show all	>Lus10029554 pacid=23149408 polypeptide=Lus10029554 locus=Lus10029554.g ID=Lus10029554.BGIv1.0 annot-version=v1.0 MAVTPPPTSLVFFLLFYHLLPPAAPLTFNKSRFDQDDTSIICSGGAAVSSGTIKLTRSHYGMEVSHVTYDGEIPLWDSTTGKLSDFTTHFSFSITADDTR HYPSGIAFFLAPVGFQTPENSAGGYIGLYNNTDRVYLSPPGKRIVHVEFDYWVNPAWDPPYQHVGINNNSLTSAAWEQWISDPPSGHPILVEISYSASTH NLTVSWVYENSRTWILWYVIDLSKVLPELVIMGFSATCNDFSGEQELLSWDFTSDIEIRESSSLKQQQKKKLMSIVALVAGIAIAANLTAYCFLKIWNKK KKKKGKLVEMSMSDEFSRGAVAGPRRFCYSDLVSATNNFSLDWKLGEGGFGSVYKGYITDDFGTLPVAVKRTSKGLRQGVEEYITEVMIISRLRHRNLVQ LIGWCHDKSELLLVYQFMPNGSLDTHLFGNESSCPIIPWPVRYKIVMGLAYALLYLHHEWDQCIVHRDIKAANIMLDSNFNVKLGDFGLARLVDHERLIT KTTKVAGTIGYMSPEYISTGRASKESDVFSFGVVCLEIATGRRVVDYIEPGLEMGFVEWVWDLYGTGKLKMAIDRRLIDFDEKEMECLMVVGLWCAHPDS VQRASIRQAIQVLKFEAALPILPEKKPVPVFPVHVPDSTDSLEASFDCADEPLISGSINDSER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10530			Concanavalin A-like lectin pro...		Lus10029554 [exp]	0	1
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10029955 [exp]	3.5	0.8388
AT1G07890		ATAPX01, CS1, A...	maternal effect embryo arrest ...		Lus10015970 [exp]	6.9	0.8252
AT4G35220			Cyclase family protein (.1)		Lus10014092 [exp]	7.2	0.8209
AT5G58375			Methyltransferase-related prot...		Lus10042227 [exp]	7.9	0.8332
AT2G46620			P-loop containing nucleoside t...		Lus10005991 [exp]	8.9	0.8151
AT1G23050			hydroxyproline-rich glycoprote...		Lus10043476 [exp]	11.4	0.7677
AT1G17100			SOUL heme-binding family prote...		Lus10042093 [exp]	13.6	0.8136
AT3G04350			Plant protein of unknown funct...		Lus10000813 [exp]	15.9	0.7956
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Lus10006747 [exp]	18.7	0.7977
AT4G29680			Alkaline-phosphatase-like fami...		Lus10008562 [exp]	20.1	0.8069

Compare expression of checked genes

Lus10029554 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.