Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10530 638 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 541 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 333 / 9e-105 Concanavalin A-like lectin protein kinase family protein (.1) AT5G06740 332 / 1e-104 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 303 / 1e-93 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 301 / 1e-92 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 298 / 3e-91 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70110 291 / 7e-89 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 289 / 5e-88 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53380 287 / 5e-87 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004277 [exp] 890 / 0 AT5G10530 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029554 [exp] 590 / 0 AT5G10530 590 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016836 [exp] 575 / 0 AT3G16810 761 / 0.0 pumilio 24 (.1) Lus10029553 [exp] 563 / 0 AT5G10530 591 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016833 [exp] 550 / 0 AT5G10530 575 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004279 [exp] 497 / 7e-168 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020446 [exp] 483 / 7e-162 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020452 [exp] 476 / 8e-160 AT5G10530 510 / 2e-173 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007077 [exp] 473 / 3e-156 AT5G10530 511 / 4e-171 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G094700 [exp] 803 / 0 AT5G10530 764 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004500 [exp] 691 / 0 AT5G10530 725 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004400 [exp] 668 / 0 AT5G10530 738 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004300 [exp] 667 / 0 AT5G10530 743 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 549 / 0 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 521 / 3e-177 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283204 [exp] 511 / 4e-174 AT5G10530 472 / 3e-159 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 512 / 1e-173 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G284200 [exp] 488 / 6e-166 AT5G10530 441 / 8e-148 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G262866 [exp] 396 / 4e-129 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10029555 pacid=23149372 polypeptide=Lus10029555 locus=Lus10029555.g ID=Lus10029555.BGIv1.0 annot-version=v1.0 ATGTCCCCAACACTGCTGATCTTCTTTGTCCTGCTTGCCATCCAATCTGCAGCTCCGTTTTCCTTCAAGAAATCGCGCTTTGATCCAATCGACACCAGCA TAGTCTACGAGGGAGGAGCCTACGCAACAGTAGGAACGATTGAATTCACCAGCAGCACTTACCAGTGTCAGGTTGGTCACGCTACTTACTCCAGCAGAGT ACCAATTTGGGACCCCGAAACTCGAAAGCTAGCAGATCTCGAATCGCACTTCACCTTCAACATCGACCGGTGGGCCAGATCGAGCTACGGAGCCGGGTTA GCTTTCTTCATGTCGCAACCAGATTTCCACATCCCTCCTAATTCTGCAGGTGGGTTCTTGGGTCTCTACAACTTAACCACCAGTAACTCGGCAAGGAATC AAATCGTCCACGTGGAATTTGACACATTCCCCAACCCGGAATGGGATCCTCCGTTTCAACACGTAGGGATCAACAACAACTCGGTCTACTCTGCCAACTA CACCTCCTGGAACGCCACTCTACATTCCGGAGAAACCGCCGATGTTTGGATTAATTACGATTCCGCCACCAAAACCCTGAACGTTTCCTGGAAATACCAA CAGGCCGAAAACAACTCGTCAGGTATTCCTGAAAACAACAACGATACAACTAGCCTTTCATACATCGTTGACTTAAGAGACTCTTTGCCTCCGTTGGTCA AAGTTGGGTTCACTGCAGCTACAAGCAATCTTGTCGAAAGGAACGTCATCCAGTCATGGGAATTCCATTCCAGCCTCGAAATTAGCGAATCGAATGGCAA CAGTCCAACAAAGATAGCTTCAATCGTCGCCCCAACTGTCGCATCTGGAGTTGTCATAGCCGTTGCTGCTTTGGCAATTGCATTTATTTGGAGAAAGAAG AAGAGACAGAGGATGAAGCAGAGGAGCAAAGAAGAAATGGACAAACTGAACCTAACTTCGATCAACAACGAGCTGGAAAGGGGAGCGGCAGGTCATCCTC GTAGATTCTCATATGATGAACTTGCTTCCGCTACCAGCAACTTCTCGAAGGAGAGGAAACTCGGAGAAGGAGGATTCGGAGAGGTATACCGTGGATACTT GAATGTCGACCCTGGATCATTTGCGGCCATCAAAAAGATAGCCAGAGGGTCTAAACAGGGGAGAAAAGAGTACATTACTGAAGTGAAGGTCATCAGCATG TTAAGACACAGGAATTTGGTACAACTTATTGGCTGGTGTCACGAAAGAGGTGAATTCCTGCTCGTATACGAGTACATGCCCAACGGTAGTCTCGACTCCC ACCTCTTTGGCAGGAATAGACCCCCTCTCAGCTGGCCTATCAGGTATCGAATCACATTGGGATTAGCATCGGCGTTGCTCTACCTCCATGAGGAAGGTGA CCAGTACGTAATTCACCGTGACATCAAGCCTAGTAACATAATGCTGGACTCGAGCTTCAACGCAAAGCTCGGTGATTTCGGGCTAGCAAGGCTGATGGAT CATGAGATGGGGTTGCAGACTACAGGTTTGGCTGGGACGCTAGGGTATTTGGCTCCCGAGTACATCAGAACTGGGAGGGCGAGCAAGGAGTCTGACGTGT ACAGCTTTGGAATCGTTGCTGTAGAAATTGCAACGGGAAGGAAAGGAAACGATCCGATTTTGGAGAAGGGGGAAGCGAGCCTGGTAGAGTGGGTTTGGGA ACTGTATGGAGGAGGTAATTTGATGACGGCTGTTGATGAAAGAGTAAGGAAGATGGGTATGGATGATGGACAAGTGGAGACGTTGATGGTGGTGGGTTTG TGGTGTGCTCATCCGGATAGGAACATGAGACCGTCGATTCGGCAAGCGATTCAGGTTCTGAATTTCGAAGCTCCGTTGCCGGATCTTCCAGGGAAGATAC CAGTTCCTCTTTACATGGTTACAATGCCGCCGCTTGTTAGCTCGGCTGAAGTGGCTTTGGTGTCCAATAATACTATTAGTTCAAGCATTATGGACGGACG TTAG
AA sequence Show only first row Show all	>Lus10029555 pacid=23149372 polypeptide=Lus10029555 locus=Lus10029555.g ID=Lus10029555.BGIv1.0 annot-version=v1.0 MSPTLLIFFVLLAIQSAAPFSFKKSRFDPIDTSIVYEGGAYATVGTIEFTSSTYQCQVGHATYSSRVPIWDPETRKLADLESHFTFNIDRWARSSYGAGL AFFMSQPDFHIPPNSAGGFLGLYNLTTSNSARNQIVHVEFDTFPNPEWDPPFQHVGINNNSVYSANYTSWNATLHSGETADVWINYDSATKTLNVSWKYQ QAENNSSGIPENNNDTTSLSYIVDLRDSLPPLVKVGFTAATSNLVERNVIQSWEFHSSLEISESNGNSPTKIASIVAPTVASGVVIAVAALAIAFIWRKK KRQRMKQRSKEEMDKLNLTSINNELERGAAGHPRRFSYDELASATSNFSKERKLGEGGFGEVYRGYLNVDPGSFAAIKKIARGSKQGRKEYITEVKVISM LRHRNLVQLIGWCHERGEFLLVYEYMPNGSLDSHLFGRNRPPLSWPIRYRITLGLASALLYLHEEGDQYVIHRDIKPSNIMLDSSFNAKLGDFGLARLMD HEMGLQTTGLAGTLGYLAPEYIRTGRASKESDVYSFGIVAVEIATGRKGNDPILEKGEASLVEWVWELYGGGNLMTAVDERVRKMGMDDGQVETLMVVGL WCAHPDRNMRPSIRQAIQVLNFEAPLPDLPGKIPVPLYMVTMPPLVSSAEVALVSNNTISSSIMDGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10530			Concanavalin A-like lectin pro...		Lus10029555 [exp]	0	1
					Lus10031026 [exp]	2.2	0.9363
AT2G19330		PIRL6	plant intracellular ras group-...		Lus10003229 [exp]	3.2	0.8995
AT5G67640			unknown protein		Lus10011552 [exp]	4.0	0.9297
AT3G47570			Leucine-rich repeat protein ki...		Lus10003072 [exp]	4.9	0.9086
AT4G23100		ATECS1, CAD2, G...	ROOT MERISTEMLESS 1, PHYTOALEX...		Lus10002001 [exp]	5.2	0.9256
AT3G47090			Leucine-rich repeat protein ki...		Lus10003071 [exp]	6.9	0.8923
AT3G20640	bHLH	bHLH123	basic helix-loop-helix (bHLH) ...		Lus10029460 [exp]	7.3	0.8809
					Lus10011553 [exp]	8.5	0.9178
AT1G25520			Uncharacterized protein family...		Lus10021697 [exp]	9.8	0.8823
					Lus10009436 [exp]	13.0	0.8983

Compare expression of checked genes

Lus10029555 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.