Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37940 105 / 4e-29 MADS AGL21 AGAMOUS-like 21 (.1) AT3G57230 105 / 7e-29 MADS AGL16 AGAMOUS-like 16 (.1.2) AT2G22630 104 / 7e-29 MADS AGL17 AGAMOUS-like 17 (.1) AT2G14210 102 / 5e-28 MADS AGL44, ANR1 ARABIDOPSIS NITRATE REGULATED 1, AGAMOUS-like 44 (.1) AT3G57390 99 / 3e-26 MADS AGL18 AGAMOUS-like 18 (.1.2) AT2G22540 98 / 3e-26 MADS AGL22, SVP SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) AT4G09960 96 / 2e-25 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT3G58780 96 / 3e-25 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT5G13790 96 / 6e-25 MADS AGL15 AGAMOUS-like 15 (.1) AT4G18960 94 / 2e-24 MADS AG AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042918 [exp] 109 / 5e-32 AT3G57230 117 / 5e-34 AGAMOUS-like 16 (.1.2) Lus10028214 [exp] 108 / 5e-32 AT2G14210 117 / 1e-34 ARABIDOPSIS NITRATE REGULATED 1, AGAMOUS-like 44 (.1) Lus10020477 [exp] 101 / 3e-28 AT4G37940 195 / 4e-64 AGAMOUS-like 21 (.1) Lus10025719 [exp] 98 / 2e-26 AT2G22540 286 / 4e-99 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Lus10007100 [exp] 98 / 3e-26 AT3G57230 226 / 4e-75 AGAMOUS-like 16 (.1.2) Lus10005325 [exp] 98 / 1e-25 AT5G13790 249 / 7e-83 AGAMOUS-like 15 (.1) Lus10039580 [exp] 96 / 3e-25 AT5G13790 246 / 2e-81 AGAMOUS-like 15 (.1) Lus10036543 [exp] 91 / 3e-25 AT2G45660 120 / 6e-36 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Lus10002763 [exp] 91 / 5e-25 AT4G18960 133 / 3e-40 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G150501 [exp] 111 / 5e-31 AT3G57230 322 / 8e-112 AGAMOUS-like 16 (.1.2) Potri.002G109601 [exp] 109 / 1e-30 AT3G57230 299 / 1e-103 AGAMOUS-like 16 (.1.2) Potri.009G079000 [exp] 106 / 1e-29 AT4G37940 293 / 3e-101 AGAMOUS-like 21 (.1) Potri.001G284600 [exp] 104 / 1e-28 AT4G37940 272 / 7e-93 AGAMOUS-like 21 (.1) Potri.001G284301 [exp] 104 / 1e-28 AT4G37940 272 / 7e-93 AGAMOUS-like 21 (.1) Potri.006G048700 [exp] 100 / 1e-26 AT3G57390 219 / 2e-71 AGAMOUS-like 18 (.1.2) Potri.009G055700 [exp] 97 / 1e-25 AT5G13790 241 / 9e-80 AGAMOUS-like 15 (.1) Potri.013G104900 [exp] 96 / 2e-25 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.007G010800 [exp] 96 / 2e-25 AT2G22540 329 / 3e-115 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.019G077200 [exp] 95 / 4e-25 AT4G09960 274 / 5e-94 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10029556 pacid=23149355 polypeptide=Lus10029556 locus=Lus10029556.g ID=Lus10029556.BGIv1.0 annot-version=v1.0 ATGGGGAGGGGGAAGATAGAGATAAGAAGGATAGATAATTCAACAAGCAGACAAGTTACCTTCTCAAAGAGAAGAAAGGGTTTGCTTAAGAAGGCTAAAG AGCTTGCTATTCTCTGTGATGCTGATGTTGCTTTGCTCATCTTCTCCAGTACTCACAAGCTCTATGATTTCTCCAACACCAGGAAAGAGGTCCGACCGGA GGGGCCGAACATTGCTGGAGCCGATCCGAAACTCTACAACCCCATAGAGACGATTATGCAGTTAGGCGGGTCGCCCTTGGCTAACCTGCATGTACTATGT TTGCTGGAGCATGGCCTCCCATCTTCGATGACTTCAATGACTCATGTTCTCAGACTTTCTTGTGTTCCATTGGCTGGATCATAG
AA sequence Show only first row Show all	>Lus10029556 pacid=23149355 polypeptide=Lus10029556 locus=Lus10029556.g ID=Lus10029556.BGIv1.0 annot-version=v1.0 MGRGKIEIRRIDNSTSRQVTFSKRRKGLLKKAKELAILCDADVALLIFSSTHKLYDFSNTRKEVRPEGPNIAGADPKLYNPIETIMQLGGSPLANLHVLC LLEHGLPSSMTSMTHVLRLSCVPLAGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Lus10029556 [exp]	0	1
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Lus10029557 [exp]	2.8	0.6785
					Lus10022170 [exp]	7.9	0.6537
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Lus10028741 [exp]	11.0	0.6029
AT5G67440		MEL2, NPY3	NAKED PINS IN YUC MUTANTS 3, M...		Lus10025193 [exp]	22.0	0.5529
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10001022 [exp]	23.8	0.5529
					Lus10035026 [exp]	25.5	0.5529
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Lus10008888 [exp]	27.0	0.5529
					Lus10009177 [exp]	28.5	0.5529
					Lus10028048 [exp]	29.8	0.5529
AT1G17930			Aminotransferase-like, plant m...		Lus10012081 [exp]	31.1	0.5433

Compare expression of checked genes

Lus10029556 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.