Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57230 106 / 2e-29 MADS AGL16 AGAMOUS-like 16 (.1.2) AT4G37940 91 / 2e-23 MADS AGL21 AGAMOUS-like 21 (.1) AT2G22630 89 / 8e-23 MADS AGL17 AGAMOUS-like 17 (.1) AT2G14210 75 / 3e-17 MADS AGL44, ANR1 ARABIDOPSIS NITRATE REGULATED 1, AGAMOUS-like 44 (.1) AT1G26310 51 / 2e-08 MADS CAL1, AGL10, CAL CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) AT5G60910 48 / 2e-07 MADS FUL, AGL8 FRUITFULL, AGAMOUS-like 8 (.1.2) AT2G45650 48 / 2e-07 MADS AGL6 AGAMOUS-like 6 (.1) AT1G69120 48 / 3e-07 MADS AGL7, AP1 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) AT4G09960 47 / 7e-07 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT2G03710 45 / 3e-06 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042919 [exp] 113 / 6e-33 AT3G57230 162 / 6e-51 AGAMOUS-like 16 (.1.2) Lus10028215 [exp] 90 / 5e-24 AT3G57230 164 / 4e-52 AGAMOUS-like 16 (.1.2) Lus10007100 [exp] 73 / 2e-16 AT3G57230 226 / 4e-75 AGAMOUS-like 16 (.1.2) Lus10041385 [exp] 49 / 7e-08 AT2G45660 140 / 5e-42 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Lus10036542 [exp] 49 / 1e-07 AT2G45660 137 / 6e-41 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Lus10004637 [exp] 48 / 2e-07 AT1G69120 318 / 2e-111 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10026679 [exp] 48 / 3e-07 AT1G69120 338 / 1e-118 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10017871 [exp] 47 / 4e-07 AT1G69120 264 / 2e-90 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10009481 [exp] 47 / 6e-07 AT4G09960 274 / 1e-92 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G150501 [exp] 116 / 9e-33 AT3G57230 322 / 8e-112 AGAMOUS-like 16 (.1.2) Potri.009G079000 [exp] 99 / 2e-26 AT4G37940 293 / 3e-101 AGAMOUS-like 21 (.1) Potri.001G284600 [exp] 98 / 4e-26 AT4G37940 272 / 7e-93 AGAMOUS-like 21 (.1) Potri.001G284301 [exp] 98 / 4e-26 AT4G37940 272 / 7e-93 AGAMOUS-like 21 (.1) Potri.002G109601 [exp] 96 / 3e-25 AT3G57230 299 / 1e-103 AGAMOUS-like 16 (.1.2) Potri.014G074100 [exp] 50 / 6e-08 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1) Potri.012G062300 [exp] 48 / 3e-07 AT5G60910 288 / 5e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.001G112400 [exp] 48 / 3e-07 AT4G22950 253 / 6e-86 AGAMOUS-like 19 (.1) Potri.010G154100 [exp] 48 / 3e-07 AT1G69120 324 / 7e-113 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Potri.008G098400 [exp] 47 / 8e-07 AT5G15800 275 / 2e-93 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region
Representative CDS sequence Show only first row Show all	>Lus10029557 pacid=23149458 polypeptide=Lus10029557 locus=Lus10029557.g ID=Lus10029557.BGIv1.0 annot-version=v1.0 ATGGGAGAAGAACTGTCTGGATTGTGTATGAAAGACCTACAGAATTTAGAGAACCAGTTAGAGATGAGCCTCACAAGCATTCGAACTAGAAAGGAACGTA TGTTAACAGAGGAGATACAGGATCTAAGGCGAAAGGGTGATCTCATTCATCAGGAGAATATAGAGCTCTACAGGAAGCTCAACCTCATCCACCAAGATAA TCTCCACATACACCAGAAGGCATATGGGAAGAGAGGTGTGATCAATAATGGTGCAATTCCAAATTTATTGATCCCGCTTGGGTTAAGCATGGGAGGAAAC TCATCAAGGAGTATTATCCCAACTACTAATCTTCAACTACGCCAACCAGACCACCAGATGATTCACAGGACGCCCAGCCCAACTTCTACCTAG
AA sequence Show only first row Show all	>Lus10029557 pacid=23149458 polypeptide=Lus10029557 locus=Lus10029557.g ID=Lus10029557.BGIv1.0 annot-version=v1.0 MGEELSGLCMKDLQNLENQLEMSLTSIRTRKERMLTEEIQDLRRKGDLIHQENIELYRKLNLIHQDNLHIHQKAYGKRGVINNGAIPNLLIPLGLSMGGN SSRSIIPTTNLQLRQPDHQMIHRTPSPTST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Lus10029557 [exp]	0	1
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Lus10029556 [exp]	2.8	0.6785
					Lus10022170 [exp]	4.6	0.7735
					Lus10010245 [exp]	5.7	0.7113
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10008454 [exp]	5.9	0.7016
AT3G12320			unknown protein		Lus10024129 [exp]	6.7	0.7201
AT1G18330	MYB	RVE7, EPR1	REVEILLE 7, EARLY-PHYTOCHROME-...		Lus10026365 [exp]	19.1	0.6350
AT3G47570			Leucine-rich repeat protein ki...		Lus10003072 [exp]	19.4	0.7540
					Lus10042539 [exp]	25.5	0.5577
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10034969 [exp]	27.0	0.6405
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10006971 [exp]	27.5	0.6238

Compare expression of checked genes

Lus10029557 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.