Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37920 514 / 0 unknown protein AT1G36320 294 / 3e-96 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033109 [exp] 273 / 8e-88 AT1G36320 437 / 1e-151 unknown protein Lus10036666 [exp] 265 / 1e-84 AT1G36320 442 / 5e-154 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G000400 [exp] 534 / 0 AT4G37920 551 / 0.0 unknown protein Potri.002G091000 [exp] 306 / 1e-100 AT1G36320 481 / 3e-169 unknown protein Potri.005G170400 [exp] 293 / 2e-95 AT1G36320 469 / 2e-164 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029560 pacid=23149374 polypeptide=Lus10029560 locus=Lus10029560.g ID=Lus10029560.BGIv1.0 annot-version=v1.0 ATGCTACATGAGGATGGGCATGATCACCAAACAATTTCTTGCTTGTATTGGAATACTGGTTTATCAAATTCAGCGATTTCTGACATCAAAAGAGGTTGCA GAGCAAGTGAAGTGGCGAATGCTCCCCAAGTGGAAGAGGAGAAATTTACAGGGAAGGAGGTTGAAGTTGGTGGTGGTTACACGATGACCCAGTTCTGCGA TAAGATGATTGATGTATTCTTGAGCGAGAAGCGGAGAGCCAAAGATTGGAGGAAATATCTTTTGTTTAGGGAAGAATGGAATAAGTACAAGGATAGTTTC TATAGCAGATGCCAAGTTAGGGCCAATATGGAGACAGATGCTGTTACTAAGGAGAAGTTAACTTCACTTGCATTCAAGGTCAAGAAGATTGACGATGAAA TGGAGAAGCACACTCATCTTCTTAAGGAGATCCGAGAAAATCCAACTGACCTGAATGTGATTGTTGCAAAGCGACGCACGGACTTCACTGGGGAGTTTTT CCGGCACCTTGCTCTTCTTGCAGATACTTATGACAGTTTGGAGGATGGAGATGATATAGCAAGGCTTGGAGCCAGATGCTTGTCCGCAGTCAGTGCATTT GATAGCACATTAGAGAATCTGGAGACATTAGAATCTGCGCAGGCCAAATTCGATGACATTCTGAATTCACCTTCTGTAGATGCAGCGTGTGAAAAGATCA AAAGCCTGGCCAAGGCCAAGGAGCTTGACTCATCCTTGATCTTATTGATAAACAGCACATGGGCAGCAGCAAAAGAGTCCACTAAAATGACCAATGAGGT GAAAGAGATAATGTACCAAATATACAAGACCACTAAGAGCAGTCTGAGAAGCATTGCCCCCAAAGAGATAAAGCTGCTAAAGCATTTGCTAAACATCACA GATCCAGAAGAGCGATTTTCAGCACTGGCAACGGCATTCTGTCCCGGTGACGATCATGAAGCCAAAAACCCATATGCCTTGTACACAACCCCTAAGGAGC TGCATAAGTGGATCAAGATCATGCTTGACGCGTACCGAATGAGCAAGGACGAGACTGAAATTAGAGAAGCTAAACAGCTTAGTCAACCTGTTGTTATGCA GAGGTTGCTCATCCTACAAGACATCATCGAGCAAGAATACATGGAGAAGACCACATTTCGAACACCTTCTGAAGGTGACTCGTCTGTGGGTTCAATCAGT TCTTCCTCCATCTCTACCGACATTGATATAGGATTTTGA
AA sequence Show only first row Show all	>Lus10029560 pacid=23149374 polypeptide=Lus10029560 locus=Lus10029560.g ID=Lus10029560.BGIv1.0 annot-version=v1.0 MLHEDGHDHQTISCLYWNTGLSNSAISDIKRGCRASEVANAPQVEEEKFTGKEVEVGGGYTMTQFCDKMIDVFLSEKRRAKDWRKYLLFREEWNKYKDSF YSRCQVRANMETDAVTKEKLTSLAFKVKKIDDEMEKHTHLLKEIRENPTDLNVIVAKRRTDFTGEFFRHLALLADTYDSLEDGDDIARLGARCLSAVSAF DSTLENLETLESAQAKFDDILNSPSVDAACEKIKSLAKAKELDSSLILLINSTWAAAKESTKMTNEVKEIMYQIYKTTKSSLRSIAPKEIKLLKHLLNIT DPEERFSALATAFCPGDDHEAKNPYALYTTPKELHKWIKIMLDAYRMSKDETEIREAKQLSQPVVMQRLLILQDIIEQEYMEKTTFRTPSEGDSSVGSIS SSSISTDIDIGF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37920			unknown protein		Lus10029560 [exp]	0	1
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Lus10029372 [exp]	1.4	0.8763
AT1G66520		PDE194	pigment defective 194, formylt...		Lus10010978 [exp]	2.4	0.8568
AT5G17660			tRNA (guanine-N-7) methyltrans...		Lus10015923 [exp]	2.6	0.8093
AT1G67660			Restriction endonuclease, type...		Lus10011377 [exp]	6.0	0.8250
AT1G11430			plastid developmental protein ...		Lus10007615 [exp]	8.7	0.8385
AT4G33480			unknown protein		Lus10020876 [exp]	9.2	0.8111
AT4G22840			Sodium Bile acid symporter fam...		Lus10028901 [exp]	10.2	0.7546
AT5G64050		ATERS, ERS, OVA...	OVULE ABORTION 3, glutamate tR...		Lus10012512 [exp]	12.4	0.8248
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10017931 [exp]	14.1	0.7929
AT1G79050			recA DNA recombination family ...		Lus10026204 [exp]	14.1	0.8087

Compare expression of checked genes

Lus10029560 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.