Plant FIBer expression Database

Lus10029562 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G63260 381 / 6e-135 TET10 tetraspanin10 (.1.2.3)
AT2G23810 179 / 3e-55 TET8 tetraspanin8 (.1)
AT3G45600 173 / 6e-53 TET3 tetraspanin3 (.1)
AT4G28050 171 / 4e-52 TET7 tetraspanin7 (.1)
AT4G30430 170 / 9e-52 TET9 tetraspanin9 (.1)
AT1G18520 165 / 7e-50 TET11 tetraspanin11 (.1)
AT5G46700 147 / 6e-43 TRN2, TET1 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1)
AT2G19580 146 / 2e-42 TET2 tetraspanin2 (.1)
AT3G12090 141 / 2e-40 TET6 tetraspanin6 (.1)
AT4G23410 141 / 2e-40 TET5 tetraspanin5 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002230
[exp]
505 / 0 AT1G63260 405 / 3e-144 tetraspanin10 (.1.2.3)
Lus10023216
[exp]
193 / 9e-61 AT2G23810 376 / 1e-132 tetraspanin8 (.1)
Lus10008891
[exp]
192 / 2e-60 AT2G23810 377 / 5e-133 tetraspanin8 (.1)
Lus10019965
[exp]
186 / 5e-58 AT2G23810 376 / 1e-132 tetraspanin8 (.1)
Lus10017336
[exp]
183 / 1e-56 AT5G46700 389 / 5e-138 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1)
Lus10015494
[exp]
177 / 2e-54 AT2G23810 370 / 2e-130 tetraspanin8 (.1)
Lus10001668
[exp]
175 / 9e-54 AT5G46700 384 / 8e-136 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1)
Lus10008563
[exp]
167 / 1e-50 AT2G19580 411 / 1e-146 tetraspanin2 (.1)
Lus10041411
[exp]
143 / 4e-42 AT4G23410 257 / 5e-87 tetraspanin5 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G107200
[exp]
427 / 5e-153 AT1G63260 416 / 1e-148 tetraspanin10 (.1.2.3)
Potri.003G093000
[exp]
181 / 4e-56 AT5G46700 369 / 4e-130 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1)
Potri.006G177900
[exp]
180 / 1e-55 AT2G23810 317 / 4e-109 tetraspanin8 (.1)
Potri.018G099800
[exp]
179 / 2e-55 AT2G23810 322 / 3e-111 tetraspanin8 (.1)
Potri.015G055700
[exp]
176 / 6e-54 AT1G18520 196 / 6e-62 tetraspanin11 (.1)
Potri.010G220300
[exp]
174 / 3e-53 AT3G12090 399 / 2e-141 tetraspanin6 (.1)
Potri.008G041600
[exp]
173 / 9e-53 AT3G12090 397 / 2e-140 tetraspanin6 (.1)
Potri.001G141400
[exp]
169 / 3e-51 AT5G46700 367 / 3e-129 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1)
Potri.006G150400
[exp]
155 / 4e-46 AT2G19580 367 / 5e-129 tetraspanin2 (.1)
Potri.009G015100
[exp]
153 / 7e-45 AT3G45600 388 / 7e-137 tetraspanin3 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0347 Tetraspannin PF00335 Tetraspanin Tetraspanin family
Representative CDS sequence
>Lus10029562 pacid=23152041 polypeptide=Lus10029562 locus=Lus10029562.g ID=Lus10029562.BGIv1.0 annot-version=v1.0
ATGGCGAGGGAGGAAATGGCGGGGATGGGAACCAGCAACTTCATCATTCGATGGGTTAATTTCCTCACTATGATATTAGCCTTTGGCATTGTGATATATG
GGGTTTGGATGAGCACTCATCACGACAGCTGCAAAAAATCCCTCACCCTCCCTATCTTATTCCTCGGTGCTTTCATTTTTCTAATCTCCGTAATTGGATT
CTTGGGAGCGTGGAAGAACAGCTCCATTCTACTATGGCTTTATCTGATTCTGCTCTGCATTATCTTGGTGGCCATTCTGGTTTTCACTGTCTTGGCGTTC
ATTGTGACAAACAATGGATCTGGGCATAGTGTGTCCGGTTTAAGGTATAAAGAGTACCAGCTTCAGGATTACAGCCCTTGGTTTCTTAGACAGCTGAACA
ACACAAATCACTGGAAGAGGCTGAAGAGTTGCCTGGTGAAATCTGATGATTGCAACCACCTATCCAGGAAATATAGAACACTGAAGCATTACAAGTCAGC
TAAGTTATCCTCCATTGAAGCCGGTTGCTGTCGGCCACCATCAGAATGTGGCTATCCTGCTGTCAATGCTTCCTTCTACGACTTGAGCTTCCATCCCGCG
AGCTCGAACAAGGATTGCAAGCTGTACAAGAACTCCAAGGCCATCAAGTGCTACAACTGTGATTCGTGCAAGGCAGGAGTTGCTCAATACATGAAAACAG
AATGGAGAGTGGTTGCAATCTTTAACCTTGTCCTGTTTGTTGTTCTGTCTACGATCTACTTCGTCGGATGCTGCGCAAGGAGAAACGCATCGAGGGTTAG
CACGAAAGCTTGA
AA sequence
>Lus10029562 pacid=23152041 polypeptide=Lus10029562 locus=Lus10029562.g ID=Lus10029562.BGIv1.0 annot-version=v1.0
MAREEMAGMGTSNFIIRWVNFLTMILAFGIVIYGVWMSTHHDSCKKSLTLPILFLGAFIFLISVIGFLGAWKNSSILLWLYLILLCIILVAILVFTVLAF
IVTNNGSGHSVSGLRYKEYQLQDYSPWFLRQLNNTNHWKRLKSCLVKSDDCNHLSRKYRTLKHYKSAKLSSIEAGCCRPPSECGYPAVNASFYDLSFHPA
SSNKDCKLYKNSKAIKCYNCDSCKAGVAQYMKTEWRVVAIFNLVLFVVLSTIYFVGCCARRNASRVSTKA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G63260 TET10 tetraspanin10 (.1.2.3) Lus10029562
[exp]
0 1
AT2G27385 Pollen Ole e 1 allergen and ex... Lus10020642
[exp]
1.7 0.9280
AT4G00165 Bifunctional inhibitor/lipid-t... Lus10009282
[exp]
3.5 0.9166
Lus10035688
[exp]
3.7 0.9064
AT1G63260 TET10 tetraspanin10 (.1.2.3) Lus10002230
[exp]
4.0 0.9053
AT2G27385 Pollen Ole e 1 allergen and ex... Lus10004847
[exp]
4.2 0.9171
AT3G19184 B3 AP2/B3-like transcriptional fa... Lus10014043
[exp]
4.2 0.9077
AT4G02980 ABP1 endoplasmic reticulum auxin bi... Lus10027985
[exp]
7.2 0.8734
AT5G05690 CBB3, DWF3, CYP... DWARF 3, CYTOCHROME P450 90A1,... Lus10030404
[exp]
7.6 0.8693
AT4G00165 Bifunctional inhibitor/lipid-t... Lus10015883
[exp]
8.1 0.9085
AT3G17590 CHE1, BSH BUSHY GROWTH, transcription re... Lus10013697
[exp]
8.8 0.8380

Lus10029562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.