Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20330 248 / 8e-82 Transcription initiation factor TFIIE, beta subunit (.1) AT4G21010 211 / 2e-67 Transcription initiation factor TFIIE, beta subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002233 [exp] 454 / 5e-163 AT4G20330 277 / 3e-93 Transcription initiation factor TFIIE, beta subunit (.1) Lus10005100 [exp] 268 / 6e-90 AT4G20330 315 / 2e-108 Transcription initiation factor TFIIE, beta subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G107500 [exp] 294 / 8e-100 AT4G20330 351 / 2e-122 Transcription initiation factor TFIIE, beta subunit (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029563 pacid=23152148 polypeptide=Lus10029563 locus=Lus10029563.g ID=Lus10029563.BGIv1.0 annot-version=v1.0 ATGGATTATAAGAACAAATCAGATAAGTTCAACAAGCAGGCGGAGATTAAGAACATGGGTTCTAAAGCTGGATCGTTGAGCAATTCGTCAGCTTCGAAAT CCGGGGGTGGTGCTGCATTTGCATCTATCAACGGGAAAAATGCTGGTCCTGGTATTAAGTTCTCTAATGATACGCAAAGGCTTCAGCATATCAACAGTAT TCGAAAGGGTCCCGTTGGGAAGCAGCTGAAGCGTGTTATAGAGCTCCTGCTCAAGGAAAGGCGTGCCTACACTCCAGAGCAGATCAATGAAGCATGTTAT GTTGACGTTAGATCAAACAAAGAGCTCTTTGACAGTTTGAAGGCAAATCCAAAAGTGAACTACGATGGGAGGAGTTTCTCCTATAAGGCGAGTCACTTTG TGAATCCCTTACAGTCGACACATAACTTGCTCAACAAGGAAGAATTACTTAAACTCATACAGAAGTGTGTAGAGGGAATGGCGGTTATCGAGCTTAAGGA TGCCTACCCTCGTGTAATGGAGGACTTACAGGAGCTAAAAAATGCAGGCAAGATTTGGCTGATGTCAAACAACGATTCAAAAGAGGACATTGCCTACCCT AATGACCCTAAGACAGCCATCAAGGTGGATGATGAGCTTAAACTGCTATTTCGAGACATTCCACTGTCTCGTGACTTTCTCGACATTGAGAGGGATCTGC AGAAGAACGGGATGAAGCCTGCAACAGACACGGCAAAGAGGAGAGCCGCTGCACAAATGGATGGCATTCCTACGAAACCAAAGTCGAAGAAGAAGAAGAC TGACATCGGCACCCGGGTTAAGCTCACCAATACACATCTTCCGGAGCTTTTCAAGAGGTCGTGA
AA sequence Show only first row Show all	>Lus10029563 pacid=23152148 polypeptide=Lus10029563 locus=Lus10029563.g ID=Lus10029563.BGIv1.0 annot-version=v1.0 MDYKNKSDKFNKQAEIKNMGSKAGSLSNSSASKSGGGAAFASINGKNAGPGIKFSNDTQRLQHINSIRKGPVGKQLKRVIELLLKERRAYTPEQINEACY VDVRSNKELFDSLKANPKVNYDGRSFSYKASHFVNPLQSTHNLLNKEELLKLIQKCVEGMAVIELKDAYPRVMEDLQELKNAGKIWLMSNNDSKEDIAYP NDPKTAIKVDDELKLLFRDIPLSRDFLDIERDLQKNGMKPATDTAKRRAAAQMDGIPTKPKSKKKKTDIGTRVKLTNTHLPELFKRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20330			Transcription initiation facto...		Lus10029563 [exp]	0	1
AT5G55810		ATNMNAT	nicotinate/nicotinamide mononu...		Lus10023862 [exp]	3.0	0.9136
AT1G76200			unknown protein		Lus10012279 [exp]	3.2	0.8966
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039428 [exp]	5.2	0.8987
AT2G23940			Protein of unknown function (D...		Lus10028450 [exp]	5.5	0.8937
AT3G20970		ATNFU2, NFU4	ARABIDOPSIS THALIANA NFU DOMAI...		Lus10034140 [exp]	5.7	0.8800
AT2G26600			Glycosyl hydrolase superfamily...		Lus10006659 [exp]	5.8	0.8627
AT4G10920		KELP	transcriptional coactivator p1...		Lus10023061 [exp]	6.5	0.9048
AT2G23090			Uncharacterised protein family...		Lus10011535 [exp]	7.6	0.8493
AT2G39435			Phosphatidylinositol N-acetygl...		Lus10030320 [exp]	7.9	0.8791
AT2G02570			nucleic acid binding;RNA bindi...		Lus10024458 [exp]	8.5	0.8753

Compare expression of checked genes

Lus10029563 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.