Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59380 45 / 1e-05 MBD6, ATMBD6 methyl-CPG-binding domain 6 (.1) AT3G46580 44 / 3e-05 MBD05, MDB5, MDB05, MBD5, ATMBD5 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002234 [exp] 395 / 5e-136 AT3G46580 42 / 2e-04 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G240100 [exp] 42 / 0.0003 AT3G46580 117 / 7e-33 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1) Potri.009G031100 [exp] 41 / 0.0004 AT3G46580 110 / 2e-30 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029564 pacid=23152133 polypeptide=Lus10029564 locus=Lus10029564.g ID=Lus10029564.BGIv1.0 annot-version=v1.0 ATGAAGTATCATCGTTGTCCTACATGGTTGCCTCCTGACTGGACCGTCGAAATAAAGTTCGTACAGAAGGGTCCGAGTCGCGGTAGCACTTATAAGTGCT ACACAGAGGTAGCAACTGGGAAAAGGCTCTACTCAAGGCCAAAGGTGCTTGCATATCTCCTCAAGTGTGGCAAACTCAACATTGGTAACACCTCTCAACC ACAGGTACCACCGTATGTACCTAATGTACAGCAGCAGCAGCAGCTGAAACCAGTAGTTCTTGCTCCTGCTCCCCCTGCATTAACAAAAGATGAGTGGAAT AAATTTGCAGCAATCTACAACACTACTGTTTCTGGAGATGAGAGATTCCCCACCCATCAAAATGGCTTTGTTCAACCTGTTATTAACTCAACTCCTCGGA AAGTATGGAATGTTCCACCCATGGAGGAACATGATGATCGTGGAAAAGTAATCATCATGAGCTCTTCCAAAATGGAGAGCTTAATGGATGAGATGCTGAG TACTGCAGCAGCAGAGCAGCAAGCTGCGGCTGAGTTGGCTAAAGCCAATTCTCAACCGAAGAAAAGAGTTGCTGAGGCTGAACCTGAGCAGCTTCAGATG CTTTTGGCAGAGAATGCTCCTCCTAGGAAGACAGGTCCGAGGTCAGCTCGAAAGGCCAGACATTACGGAAACCTCGACAACACTGTTATTGTTCCAGCAG CAAAACCTGCAATGAAGCTTGTTCCTCCAGAGAACTGGGATCAGGTTGGTGGTATGGAGAATGTGAATGGTCCTCTTATGGACATCGACAAGGTCGAAAA GCCTATAAGGTCGAAAAGCTTGTCGAGCCTTCTGCTGTGGAGGATGTGA
AA sequence Show only first row Show all	>Lus10029564 pacid=23152133 polypeptide=Lus10029564 locus=Lus10029564.g ID=Lus10029564.BGIv1.0 annot-version=v1.0 MKYHRCPTWLPPDWTVEIKFVQKGPSRGSTYKCYTEVATGKRLYSRPKVLAYLLKCGKLNIGNTSQPQVPPYVPNVQQQQQLKPVVLAPAPPALTKDEWN KFAAIYNTTVSGDERFPTHQNGFVQPVINSTPRKVWNVPPMEEHDDRGKVIIMSSSKMESLMDEMLSTAAAEQQAAAELAKANSQPKKRVAEAEPEQLQM LLAENAPPRKTGPRSARKARHYGNLDNTVIVPAAKPAMKLVPPENWDQVGGMENVNGPLMDIDKVEKPIRSKSLSSLLLWRM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59380		MBD6, ATMBD6	methyl-CPG-binding domain 6 (....		Lus10029564 [exp]	0	1
AT1G77460			Armadillo/beta-catenin-like re...		Lus10029690 [exp]	3.7	0.9707
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025414 [exp]	4.8	0.8769
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10004882 [exp]	5.7	0.9608
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10007117 [exp]	6.0	0.8133
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10032214 [exp]	6.6	0.8989
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Lus10016711 [exp]	6.9	0.9608
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10031577 [exp]	7.5	0.9087
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10017911 [exp]	8.0	0.9608
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10025981 [exp]	8.9	0.9608
AT4G33920			Protein phosphatase 2C family ...		Lus10000700 [exp]	9.8	0.9608

Compare expression of checked genes

Lus10029564 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.