Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63220 221 / 1e-75 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT3G55470 107 / 2e-30 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT4G00467 81 / 1e-19 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G34150 64 / 6e-13 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G47710 57 / 6e-11 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G05500 57 / 4e-10 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G21160 55 / 1e-09 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT1G03370 53 / 8e-09 C2 calcium/lipid-binding and GRAM domain containing protein (.1) AT4G05330 52 / 2e-08 AGD13 ARF-GAP domain 13 (.1) AT3G07940 50 / 6e-08 Calcium-dependent ARF-type GTPase activating protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002235 [exp] 296 / 7e-105 AT1G63220 216 / 2e-73 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10040291 [exp] 110 / 2e-31 AT3G55470 191 / 4e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10023410 [exp] 76 / 5e-18 AT3G55470 149 / 5e-47 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10014780 [exp] 74 / 1e-16 AT4G00467 168 / 1e-52 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10027875 [exp] 70 / 7e-15 AT4G34150 246 / 3e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10002825 [exp] 66 / 2e-13 AT4G34150 243 / 5e-81 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10006193 [exp] 65 / 7e-13 AT5G11100 862 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10041034 [exp] 64 / 1e-12 AT5G11100 710 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10008055 [exp] 64 / 2e-12 AT1G05500 775 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G155600 [exp] 199 / 2e-66 AT1G63220 202 / 1e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.010G203000 [exp] 129 / 7e-39 AT3G55470 167 / 6e-54 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.010G203100 [exp] 107 / 2e-30 AT3G55470 163 / 3e-52 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.014G084100 [exp] 89 / 1e-22 AT4G00467 194 / 4e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G301900 [exp] 67 / 3e-14 AT4G34150 204 / 8e-66 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.009G097900 [exp] 67 / 5e-14 AT4G34150 213 / 5e-69 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G123200 [exp] 62 / 2e-12 AT4G34150 185 / 3e-58 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G038300 [exp] 61 / 3e-11 AT5G04220 629 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.006G063900 [exp] 59 / 7e-11 AT1G05500 847 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G223900 [exp] 59 / 8e-11 AT5G04220 598 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10029565 pacid=23152019 polypeptide=Lus10029565 locus=Lus10029565.g ID=Lus10029565.BGIv1.0 annot-version=v1.0 ATGCCTCAAGGGGTTCTCGAAGTCCTCCTCGTCAGCGCCAAGGGCCTGGAGAACACCGATTTCCTCAATGACATGGATCCTTACGTGATCCTGACTTGTC GCACTCACGAGCAGAAAAGCAGCGTCGCTTCAGGAAAGGGGAGTGAGCCAGAGTGGAATGAGAATTTCGTGTTCACTGTATCAGAAGGTGCCAGCCAGCT TTGCTTGAAGATCATGGACAGTGATGCTGGCACTGCTGATGATTTCGTCGGAGAAGCCACAATTCCATTGGATCCAGTGTTTGATGAAGGAAGCATTCCT CCAAGTTCATATAATGTGGTGAAGGATGGTGAATACAAAGGCTCCATCAGAGTTGGCCTCACCTACAAAAGAGAGGAAAATCGAAGCCGCGGGATGGAGG AGGAAAGCTTCGGAGGATGGAAACAGTCTGAAGAATCATACTAA
AA sequence Show only first row Show all	>Lus10029565 pacid=23152019 polypeptide=Lus10029565 locus=Lus10029565.g ID=Lus10029565.BGIv1.0 annot-version=v1.0 MPQGVLEVLLVSAKGLENTDFLNDMDPYVILTCRTHEQKSSVASGKGSEPEWNENFVFTVSEGASQLCLKIMDSDAGTADDFVGEATIPLDPVFDEGSIP PSSYNVVKDGEYKGSIRVGLTYKREENRSRGMEEESFGGWKQSEESY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63220			Calcium-dependent lipid-bindin...		Lus10029565 [exp]	0	1
AT1G63220			Calcium-dependent lipid-bindin...		Lus10002235 [exp]	1.0	0.8965
AT5G14360			Ubiquitin-like superfamily pro...		Lus10022315 [exp]	2.0	0.8282
AT3G10330			Cyclin-like family protein (.1...		Lus10035440 [exp]	7.3	0.7782
AT5G62580			ARM repeat superfamily protein...		Lus10033129 [exp]	11.5	0.7312
AT3G46010		ATADF1, ADF1	actin depolymerizing factor 1 ...		Lus10025319 [exp]	11.7	0.7695
AT5G46150			LEM3 (ligand-effect modulator ...		Lus10038516 [exp]	11.7	0.6793
AT5G27930			Protein phosphatase 2C family ...		Lus10015206 [exp]	12.4	0.7553
AT5G25450			Cytochrome bd ubiquinol oxidas...		Lus10008081 [exp]	12.6	0.7722
AT4G38690			PLC-like phosphodiesterases su...		Lus10034483 [exp]	13.3	0.7579
AT5G56600		PRF3, PFN3	profilin 3 (.1.2)		Lus10043040 [exp]	13.5	0.7626

Compare expression of checked genes

Lus10029565 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.