Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47740 187 / 6e-57 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) AT2G24940 173 / 2e-53 ATMAPR2 membrane-associated progesterone binding protein 2 (.1) AT3G48890 118 / 7e-31 MSBP2, ATMP2, ATMAPR3 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) AT5G52240 111 / 8e-29 ATMAPR5, ATMP1, MSBP1 ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 5, membrane steroid binding protein 1 (.1.2) AT4G14965 85 / 1e-18 ATMAPR4 membrane-associated progesterone binding protein 4 (.1) AT5G57035 60 / 2e-09 U-box domain-containing protein kinase family protein (.1) AT5G65500 60 / 2e-09 U-box domain-containing protein kinase family protein (.1) AT3G49060 54 / 2e-07 U-box domain-containing protein kinase family protein (.1.2) AT1G16760 51 / 1e-06 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G45920 50 / 2e-06 U-box domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002238 [exp] 416 / 2e-145 AT5G47740 183 / 2e-56 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10002241 [exp] 206 / 5e-66 AT2G24940 172 / 1e-57 membrane-associated progesterone binding protein 2 (.1) Lus10019487 [exp] 119 / 4e-31 AT5G47740 128 / 3e-36 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10038356 [exp] 117 / 5e-31 AT3G48890 216 / 2e-71 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10043338 [exp] 118 / 1e-30 AT5G47740 128 / 2e-36 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10014988 [exp] 110 / 7e-28 AT3G48890 260 / 2e-88 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10038868 [exp] 109 / 9e-28 AT3G48890 265 / 2e-90 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10027449 [exp] 109 / 2e-27 AT3G48890 270 / 3e-92 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10005746 [exp] 109 / 2e-27 AT3G48890 270 / 3e-92 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G003900 [exp] 246 / 2e-79 AT5G47740 215 / 3e-69 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.018G016900 [exp] 176 / 1e-54 AT2G24940 171 / 6e-57 membrane-associated progesterone binding protein 2 (.1) Potri.006G266200 [exp] 166 / 2e-50 AT2G24940 160 / 1e-52 membrane-associated progesterone binding protein 2 (.1) Potri.012G084700 [exp] 132 / 3e-36 AT5G47740 124 / 1e-34 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.015G083100 [exp] 132 / 5e-36 AT5G47740 112 / 5e-30 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.015G139800 [exp] 117 / 1e-30 AT3G48890 277 / 3e-95 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Potri.012G137800 [exp] 114 / 1e-29 AT3G48890 259 / 3e-88 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Potri.015G125100 [exp] 109 / 6e-28 AT3G48890 201 / 1e-65 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Potri.016G022700 [exp] 83 / 8e-18 AT4G14965 345 / 3e-121 membrane-associated progesterone binding protein 4 (.1) Potri.009G030400 [exp] 79 / 2e-15 AT2G45910 398 / 5e-126 U-box domain-containing protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00173 [flax] [poplar] Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10029567 pacid=23152141 polypeptide=Lus10029567 locus=Lus10029567.g ID=Lus10029567.BGIv1.0 annot-version=v1.0 ATGGCGGAGTTGTCGACGGCGCCACATCCGAGACCGGACCCACAAGCCGGCGCCCGAGATTTCCAGTCCGATGAGGTCTACTACTACGCCGAACTCTACG GCAGCAGCAATCAGCGACAGAGCAGCAGCAATAATAGCGCGTGGGAAATCGAAGAGGAGGAGGACGAGCTGTTCGAGATCCGTCGAGGCGAAGAAGGATC ACCACCATTGGCGAGCATCAAGGAGGAGATCGGGAGTGGGGAAGTCAACGACGACGACTGCGTGTACGTCGGAGTAGGGAAGGGAGAATCCAGTGCCGAC GCCGTGGCTTGGGCGTCCAGGAATACGAACGCCGGAGCCACCGTTTACCTCATCCACGTCTTCCCTGAAGTTCGCCACATTCCATCTCCCCTGGGTAAGC TTCCAAAGAGTCAAGTGAGTCCAGAACAAGTGGAGAGCTACATGGCTCAGGAACGAGGCAAGCGAAGACTACTCCTTCAGACCTTCATTAACCAGTGCTC CGCTTCCAAGGTGAAGGTAGACACTATTCTGATAGAGAGCGACACGGCGGGGAAGGCGATTCGGGACCTGATCCCAATCCTCAACATCAAGAAGCTTGTG CTAGGAACCAACAAATCCAACGTCAAGAAACTCAAGCACAGGAAAGGGAACACAAACATCGCCGATCAGGTGATCCTCAACGCACCGGAGGGCTGCGAGA TCAGCATCGTATGCCAAGGTCAGCAAGTCATGACCGTCGATGGCCGCACCGGTGTATCGTCTCCTTCTCCGATCAAGGAAATGGAGCTGCCGGCAGCAGC GTCAAACAGTAATAATGTCGCCGCCGGTGAAGCTTTTGCATGCATGTGTTTTAAGTCTCCAAGGGTGACCTCTGAGGAAGTGAAAAAGCCATTGATTCCG ATCAGCACAAACCACCGTCCACCAACCAACCCAATTCTACATCCGATGGAGTTCACGGCGGCGCAGCTGAGTCAGTACAACGGCACCGACTCATCCAAGC CCATCTACGTGGCGATCAAGGGCCGGGTGTTCGACGTCACAACCGGCAACTCCTTCTACGGCCCCGGCGGCTCCTACGCCATGTTCGCCGGCAAAGACGC CAGCAGAGCTCTGGCCAAGATGAGCAAGGATGACGCCGACGTCATCCCTTCTCTCCACGGACTCTCCGAGAAGGAGCTCGGCGTCCTCGCCGACTGGGAG AAGAAGTTCGAAGCTAAGTACCCTGTCGTCGGCCGTGTCATCTCCTAA
AA sequence Show only first row Show all	>Lus10029567 pacid=23152141 polypeptide=Lus10029567 locus=Lus10029567.g ID=Lus10029567.BGIv1.0 annot-version=v1.0 MAELSTAPHPRPDPQAGARDFQSDEVYYYAELYGSSNQRQSSSNNSAWEIEEEEDELFEIRRGEEGSPPLASIKEEIGSGEVNDDDCVYVGVGKGESSAD AVAWASRNTNAGATVYLIHVFPEVRHIPSPLGKLPKSQVSPEQVESYMAQERGKRRLLLQTFINQCSASKVKVDTILIESDTAGKAIRDLIPILNIKKLV LGTNKSNVKKLKHRKGNTNIADQVILNAPEGCEISIVCQGQQVMTVDGRTGVSSPSPIKEMELPAAASNSNNVAAGEAFACMCFKSPRVTSEEVKKPLIP ISTNHRPPTNPILHPMEFTAAQLSQYNGTDSSKPIYVAIKGRVFDVTTGNSFYGPGGSYAMFAGKDASRALAKMSKDDADVIPSLHGLSEKELGVLADWE KKFEAKYPVVGRVIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47740			Adenine nucleotide alpha hydro...		Lus10029567 [exp]	0	1
AT2G24940		ATMAPR2	membrane-associated progestero...		Lus10002241 [exp]	4.0	0.8337
AT1G01170			Protein of unknown function (D...		Lus10042373 [exp]	5.1	0.7965
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Lus10005458 [exp]	5.5	0.8474
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Lus10025725 [exp]	11.8	0.7938
AT5G58730			pfkB-like carbohydrate kinase ...		Lus10018235 [exp]	15.0	0.8451
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10020735 [exp]	19.6	0.7979
AT1G70420			Protein of unknown function (D...		Lus10029153 [exp]	19.9	0.7967
AT5G46250			RNA-binding protein (.1.2.3)		Lus10038494 [exp]	21.1	0.8354
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Lus10000804 [exp]	21.5	0.7690
AT1G74940			Protein of unknown function (D...		Lus10027642 [exp]	25.7	0.7903

Compare expression of checked genes

Lus10029567 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.