Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04110 164 / 7e-44 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT5G03620 161 / 6e-43 Subtilisin-like serine endopeptidase family protein (.1) AT3G14067 161 / 6e-43 Subtilase family protein (.1) AT5G67090 160 / 8e-43 Subtilisin-like serine endopeptidase family protein (.1) AT4G00230 157 / 1e-41 XSP1 xylem serine peptidase 1 (.1) AT4G34980 155 / 6e-41 SLP2 subtilisin-like serine protease 2 (.1) AT5G67360 149 / 9e-39 ARA12 Subtilase family protein (.1) AT5G59130 147 / 3e-38 Subtilase family protein (.1.2) AT5G59090 144 / 3e-37 ATSBT4.12 subtilase 4.12 (.1.2.3) AT5G59810 144 / 5e-37 ATSBT5.4 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002242 [exp] 461 / 2e-156 AT5G67360 555 / 0.0 Subtilase family protein (.1) Lus10029577 [exp] 376 / 3e-129 AT1G04110 179 / 9e-51 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10006307 [exp] 377 / 1e-123 AT5G67360 532 / 2e-179 Subtilase family protein (.1) Lus10002244 [exp] 375 / 4e-120 AT5G67360 567 / 0.0 Subtilase family protein (.1) Lus10006303 [exp] 365 / 2e-119 AT5G67360 563 / 0.0 Subtilase family protein (.1) Lus10006310 [exp] 365 / 5e-119 AT5G67360 542 / 0.0 Subtilase family protein (.1) Lus10002243 [exp] 350 / 3e-118 AT1G04110 248 / 4e-75 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10006306 [exp] 364 / 2e-116 AT5G67360 555 / 0.0 Subtilase family protein (.1) Lus10029580 [exp] 352 / 3e-114 AT5G67360 536 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G006570 [exp] 286 / 3e-89 AT1G04110 568 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.001G113700 [exp] 276 / 7e-85 AT1G04110 538 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118700 [exp] 275 / 8e-85 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118800 [exp] 267 / 1e-81 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118500 [exp] 263 / 3e-80 AT1G04110 557 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.002G256300 [exp] 175 / 6e-48 AT1G04110 1020 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.007G045100 [exp] 171 / 2e-46 AT5G67090 727 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G074600 [exp] 170 / 6e-46 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.014G026600 [exp] 162 / 2e-43 AT5G67360 546 / 0.0 Subtilase family protein (.1) Potri.009G100500 [exp] 160 / 1e-42 AT4G34980 541 / 0.0 subtilisin-like serine protease 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10029568 pacid=23151945 polypeptide=Lus10029568 locus=Lus10029568.g ID=Lus10029568.BGIv1.0 annot-version=v1.0 ATGGAGAAAGCCTTACCATGGCAACTATATATTGATGGCAATGGTTCCAAAAAATTTCTGCAGTGGACATCTTCAGAAGGCAAAAACAGGATATCCCTTC TCCTAATTTCCCTCGCTTTAACTTCCACTTACTACTACTTGTTCTCCTCCCCCAAAACTGACTTACAAACTTACATTGTGTTTCTGGACAAACCAGAAGG CCTAACTTTCACACAGTCAAGTGATTTACATGGCTGGTACAACACATTCCTGCCCAGAACTGCATACAGCTCGAAAAAACAACAAAAACGCGTGGTGCAT TACTATCGACATGTGATTGCTGGCTTTGCTGCTAAGCTTACACCAGAAGAAGCCAAAGCAATGGAGAAGAAGGAAGGTTTTGTGTCAGCAAGAGTTGAGA GATCCTTGTCTCTACATACTATTCACACTCCCGAGTTCTTGGGTCTGCTGCAAAATCAAGGGAGCTATTGGAGCTCTGCACATTTCGGTAGAGGAATGAT CATTGGTGTTATTGATGGTGGCATCAAGCACGATCACCCTTCGTTTGACGATAGAGGTATGCCTCCACCACCTGCAAGATGGAAAGGAAAGTGCGAGTTC AATGGGAAGAAGACTTGTAACAACAAGCTTATAGGTGCTAGAAGCTTTGTTTCTCCGGGGGATATCCCGTCGGAAGATACTCTCCATGGGACTCATATTG CTGGAGAAGCTGGTGGGATTTCTGTGGAACGTGCCAATGTGTTTGGACAAGCTAACGGAACTGCGATGGGGATCGCACCGTTTGCCCACTTGGAGATGTA CAAGGTTTGTGGAACTAGTTCTGAATGCATGGAGAGTACAGTATTGGCAGCAATTGATGCTGCTATAGAGGATGGTGTTGATGGCCAGTCCAGTTTCCAG CCTAGGGACTTTCATGCACAGGCACTTCCAATTGTTGATGCTGGAGCGAGTGTGAATGCATCAACAGCATTTTGTGAAGAAGGATCACTGAAGAACATTG ATGTTAGAGGAAATATTGTTCTGTGCCAGGAGAGAAGTGTCAATCGGGGCATCATTCGAGGAATTGAAGTCAAGGAAAATAGTGGAGTAGCCATGATCTT GATCAATGGTGTGGAACAGGGTTCACTACTCAAGCTGAAGCCCTGTCCTTCCTGCATCAAACGTCAATTACAAAGATGGATTGGCAATCAAAGATTACTT GAACTCCACGTCATCTCCAACTGCAACAATCTCATTCCAAGGTACTTTTTTTGGAAAGTTGAGTGCTCCACAAGTAGCCTCGTTCTCGTGAAGAGGTCCC AGCAAACAAAGCGCCGGGATCCTGAAACCTGA
AA sequence Show only first row Show all	>Lus10029568 pacid=23151945 polypeptide=Lus10029568 locus=Lus10029568.g ID=Lus10029568.BGIv1.0 annot-version=v1.0 MEKALPWQLYIDGNGSKKFLQWTSSEGKNRISLLLISLALTSTYYYLFSSPKTDLQTYIVFLDKPEGLTFTQSSDLHGWYNTFLPRTAYSSKKQQKRVVH YYRHVIAGFAAKLTPEEAKAMEKKEGFVSARVERSLSLHTIHTPEFLGLLQNQGSYWSSAHFGRGMIIGVIDGGIKHDHPSFDDRGMPPPPARWKGKCEF NGKKTCNNKLIGARSFVSPGDIPSEDTLHGTHIAGEAGGISVERANVFGQANGTAMGIAPFAHLEMYKVCGTSSECMESTVLAAIDAAIEDGVDGQSSFQ PRDFHAQALPIVDAGASVNASTAFCEEGSLKNIDVRGNIVLCQERSVNRGIIRGIEVKENSGVAMILINGVEQGSLLKLKPCPSCIKRQLQRWIGNQRLL ELHVISNCNNLIPRYFFWKVECSTSSLVLVKRSQQTKRRDPET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029568 [exp]	0	1

Compare expression of checked genes

Lus10029568 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.