Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26330 122 / 7e-33 ATSBT3.18, UNE17 UNFERTILIZED EMBRYO SAC 17, Subtilisin-like serine endopeptidase family protein (.1) AT2G04160 119 / 6e-32 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G59810 117 / 4e-31 ATSBT5.4 Subtilase family protein (.1) AT1G04110 116 / 7e-31 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT1G32980 109 / 1e-30 Subtilisin-like serine endopeptidase family protein (.1) AT3G14240 115 / 2e-30 Subtilase family protein (.1) AT3G14067 115 / 3e-30 Subtilase family protein (.1) AT4G10510 114 / 8e-30 Subtilase family protein (.1) AT5G67360 112 / 2e-29 ARA12 Subtilase family protein (.1) AT5G51750 112 / 2e-29 ATSBT1.3 subtilase 1.3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029576 [exp] 194 / 1e-63 AT5G67360 177 / 2e-51 Subtilase family protein (.1) Lus10002242 [exp] 184 / 8e-55 AT5G67360 555 / 0.0 Subtilase family protein (.1) Lus10029580 [exp] 176 / 5e-52 AT5G67360 536 / 0.0 Subtilase family protein (.1) Lus10006307 [exp] 175 / 1e-51 AT5G67360 532 / 2e-179 Subtilase family protein (.1) Lus10006310 [exp] 174 / 2e-51 AT5G67360 542 / 0.0 Subtilase family protein (.1) Lus10002244 [exp] 174 / 6e-51 AT5G67360 567 / 0.0 Subtilase family protein (.1) Lus10006306 [exp] 170 / 2e-49 AT5G67360 555 / 0.0 Subtilase family protein (.1) Lus10029570 [exp] 169 / 2e-49 AT5G67360 550 / 0.0 Subtilase family protein (.1) Lus10029575 [exp] 168 / 4e-49 AT5G67360 552 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G006570 [exp] 129 / 3e-35 AT1G04110 568 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.001G113700 [exp] 129 / 3e-35 AT1G04110 538 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118500 [exp] 129 / 4e-35 AT1G04110 557 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118800 [exp] 125 / 4e-34 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118700 [exp] 124 / 2e-33 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.011G165900 [exp] 123 / 3e-33 AT2G04160 882 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.014G026600 [exp] 122 / 6e-33 AT5G67360 546 / 0.0 Subtilase family protein (.1) Potri.014G171600 [exp] 122 / 8e-33 AT2G04160 986 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050300 [exp] 122 / 1e-32 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G002200 [exp] 120 / 3e-32 AT4G26330 891 / 0.0 UNFERTILIZED EMBRYO SAC 17, Subtilisin-like serine endopeptidase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029569 pacid=23152107 polypeptide=Lus10029569 locus=Lus10029569.g ID=Lus10029569.BGIv1.0 annot-version=v1.0 ATGTCGTGTCCACATCTTAGCGGTGTTGCAACTTTAATCAAGGCAATGCATCCAGACTGGTCACCTGCTGCAATAAAGTCAGCGATTTTAACCACTGCTT ACACAAAGGACCTTAGTGGTAAGCCGATCTCCAATGAGCAGAATTCTCCTGCAACTGACTTTGATATGGGTGCTGGACATGTGAACCCACCTAAAGCTAT GGATCCAGGTTTGATATATGATATCCAACTGGATGATTATGTTGCGTATATCTGCAGTTTGGGTTACAACGATTCATTTGTGGCCTTACTGCCTAAAAAC TTGATCCTGGAATGTAAACCTCGTGTTATGATAATAGACGTTGTGCTTTTCAGGTGCATCGTGTTCAAGCTTCTAAAGATACTCAGTCAACCACCACAAC AAGATACTGCTGTGGAGAGAAAATGGGTTACAATATGTTTTAAGAAGATCAGTTTGCTTTCCAGAAGATGGTAA
AA sequence Show only first row Show all	>Lus10029569 pacid=23152107 polypeptide=Lus10029569 locus=Lus10029569.g ID=Lus10029569.BGIv1.0 annot-version=v1.0 MSCPHLSGVATLIKAMHPDWSPAAIKSAILTTAYTKDLSGKPISNEQNSPATDFDMGAGHVNPPKAMDPGLIYDIQLDDYVAYICSLGYNDSFVALLPKN LILECKPRVMIIDVVLFRCIVFKLLKILSQPPQQDTAVERKWVTICFKKISLLSRRW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26330		ATSBT3.18, UNE1...	UNFERTILIZED EMBRYO SAC 17, Su...		Lus10029569 [exp]	0	1
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029576 [exp]	10.2	0.7079
AT5G22410		RHS18	root hair specific 18 (.1)		Lus10032511 [exp]	18.0	0.6642
					Lus10007507 [exp]	21.7	0.6863
AT5G14345		AtENODL21	early nodulin-like protein 21 ...		Lus10032111 [exp]	23.3	0.6735
AT2G32360			Ubiquitin-like superfamily pro...		Lus10015125 [exp]	31.1	0.6734
AT4G15390			HXXXD-type acyl-transferase fa...		Lus10032497 [exp]	39.3	0.6497
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023894 [exp]	40.3	0.6413
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10036617 [exp]	52.5	0.6314
AT3G19090			RNA-binding protein (.1)		Lus10012058 [exp]	110.2	0.5279
AT3G24110			Calcium-binding EF-hand family...		Lus10007131 [exp]	139.2	0.5499

Compare expression of checked genes

Lus10029569 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.