Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04110 525 / 7e-177 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT5G67360 519 / 9e-175 ARA12 Subtilase family protein (.1) AT3G14067 511 / 2e-171 Subtilase family protein (.1) AT2G05920 508 / 2e-170 Subtilase family protein (.1) AT2G04160 485 / 2e-161 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT4G34980 483 / 2e-160 SLP2 subtilisin-like serine protease 2 (.1) AT3G14240 481 / 9e-160 Subtilase family protein (.1) AT5G59810 477 / 4e-158 ATSBT5.4 Subtilase family protein (.1) AT1G01900 466 / 7e-154 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT5G51750 442 / 9e-145 ATSBT1.3 subtilase 1.3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029575 [exp] 1439 / 0 AT5G67360 552 / 0.0 Subtilase family protein (.1) Lus10006306 [exp] 1185 / 0 AT5G67360 555 / 0.0 Subtilase family protein (.1) Lus10002244 [exp] 1150 / 0 AT5G67360 567 / 0.0 Subtilase family protein (.1) Lus10006303 [exp] 1138 / 0 AT5G67360 563 / 0.0 Subtilase family protein (.1) Lus10002242 [exp] 1058 / 0 AT5G67360 555 / 0.0 Subtilase family protein (.1) Lus10006310 [exp] 1045 / 0 AT5G67360 542 / 0.0 Subtilase family protein (.1) Lus10029580 [exp] 1019 / 0 AT5G67360 536 / 0.0 Subtilase family protein (.1) Lus10006307 [exp] 1015 / 0 AT5G67360 532 / 2e-179 Subtilase family protein (.1) Lus10028893 [exp] 782 / 0 AT1G04110 580 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G006570 [exp] 838 / 0 AT1G04110 568 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118500 [exp] 837 / 0 AT1G04110 557 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.001G113700 [exp] 837 / 0 AT1G04110 538 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118700 [exp] 798 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118800 [exp] 790 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.014G074600 [exp] 573 / 0 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.002G256300 [exp] 524 / 2e-176 AT1G04110 1020 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.006G141200 [exp] 515 / 6e-173 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.003G067000 [exp] 507 / 7e-170 AT3G14067 969 / 0.0 Subtilase family protein (.1) Potri.004G173900 [exp] 504 / 7e-169 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10029570 pacid=23152137 polypeptide=Lus10029570 locus=Lus10029570.g ID=Lus10029570.BGIv1.0 annot-version=v1.0 ATGAAAGCCTTTCTCATCATTTCCCTTACTTTAGCTTCCGCTTTCTTCTCCTTCCAGGAAGCATCAGCTTCTGGGAAAACCAAGTTAGAAACTTATATTG TGTTTGTGGAGAAACCAGAGAGCGTCGCACAATCAACTGATTTTGATTTCAATGGCTGGTACAAAACATTCCTTCCTGAAACTGTGTTAAGCTCAAGCGA CGAAGAGCGCATGGTGCATTCATATCAAAAGGTGATCACGGGCTTTGCCGCTAAGCTTACACAAGAAGAAGCCAAAGCAATGGAGAAGAAGAACGGATTT GTGTCAGCAAGACTTGATAGAACCGTGTCTCTGCATACAACTCACACTCCCAAGTTCCTGGGTCTGCAGCAAAATCTAGGTGGTTGGAACTCTTCAAATT TTGGCAAAGGAATGATCATAGGTATGATTGACAGTGGCATCAAGTTTGATCATCCTTCGTTTAGCGACGAAGGTATGCCTGCACCTCCTGCAAAATGGAA AGGCAAGTGTGAGATCAATGGTAAGATGACTTGTAACAATAAGCTCATTGGTGCTAGAAGCTTTCCCACTGCGGGGAATCTTTCAGAAGAGGTTTTCCAT GGAACTCATACCGCTGCAGAAGCTGCTGGAACTGCTGTGGAAGGTGCCAATGTGTTTGGACAAGCTAATGGGACAGCAATGGGGATCGCCCCGTTTGCCC ACTTGGCGATGTACAAGGTCTGTGTAACTAGTTTTGAATGCTTTGAGAGTTCGGTATTGGCAGGAATGGATGCTGCTATACAGGATGGTGTGGATGTGCT TTCACTGTCACTTGGAGATCCATCAGATCATCTTTATGATGATGTAATTGCATTGGGTGCATTCAGAGCCATCCAAAATGGTATCTTTGTGAGCTGCTCA GCAGGCAACAGTGGACCAGATAGTTCTTCTGTATTAAATGAGGCACCTTGGATTCTAACAGTTGGAGCAAGTACCATTGATAGGGAAATCAGGTCAACAG TGACATTAGGTAACAATGAGCAATTTCACGGCCAATCCCTTTTCCAGCCTACGGACTTTCATCCACAGCAATTGCCATTTGTCGATGCTGGCGCGAAAAG CAGTGCTTCAGCAACTTTTTGTGACGCAGGATCACTAAAGAACATCGACGTTACAGGCAAGATTGTAATCTGCCAAATTGGAGGTAATTCTGGATCAGTT GACAAAGGAGTAGAAGTAAAAGCAAATGGTGGAGTCGGCATGATCGTAATCAATGATTTGGCCCGAGGGTTTTTCACTACACCTGCACCCCATGTCCTTC CTGCATCGCATATCAATTACAAGGACGGATTGGCAATCAGAGCTTACTTGAACTCCACATCATCTCCTACTGCAGCAATCTCATTCCAAGGTACCTTGAT CGGTAATGTGAGTGCACCACAAATAGCTTTGTTTTCATCTAGAGGTCCCAGCACAATAACTCCAGGGATCCTGAAACCTGACATCATTGGTCCTGGGGTG AGCATTTTAGCAGCATGGGGAGAATCAGTTGACAATGCTACAAATTCATTCAATATAATCTCGGGAACTTCGATGTCTTGTCCACATCTTAGCGGTGTTG CAGCTGTAATCAAGGCAGTGCACCCAAACTGGTCTCCTGCTGCCATAAAGTCGGCCATTTTAACCACTGCTTACACAGTTGACCAAAGTGGGAAGCCAAT CTCCAATGAGCAAAATACCCCTGCTATTGTCTTTGATATGGGTTCTGGCCATGTCAACCCACCAAAAGCCTTGAGTCCTGGCTTGGTATACGATATCCAA CCGGATGACTACGTCGGCTATCTCTGTGGTTTGGGTTACAATGACACACAGGTAAGCATAATCGTGCAGCGAAAAGTGAAGTGCTCGAATGAATCTGTCA TACCAGAGGCTCAATTGAACTACCCGACATTTTCTATCTCGTTAAGTTCTACTCAACAGACCTATACCAGAACAGTTACTAATGTTGGTGTGCCTAGCTC AACTTACACAAGCACGATATTGTCACCAGCTGGCGTGGATATTAAAGTCAGCCCGAGTGAAATTAAGTTCAACCAGCTGGAAGAGAAAGCAACATATTCC GTAACATTCAGCAGAGTGGGAAATGTGACAGGAGCTGTAAGCCAAGGTTCCGTGGTGTGGTCATCATCCGATGCTCGCTACAATGTCGTGAGCACAATTG CTGTGGTATTTGTTTGA
AA sequence Show only first row Show all	>Lus10029570 pacid=23152137 polypeptide=Lus10029570 locus=Lus10029570.g ID=Lus10029570.BGIv1.0 annot-version=v1.0 MKAFLIISLTLASAFFSFQEASASGKTKLETYIVFVEKPESVAQSTDFDFNGWYKTFLPETVLSSSDEERMVHSYQKVITGFAAKLTQEEAKAMEKKNGF VSARLDRTVSLHTTHTPKFLGLQQNLGGWNSSNFGKGMIIGMIDSGIKFDHPSFSDEGMPAPPAKWKGKCEINGKMTCNNKLIGARSFPTAGNLSEEVFH GTHTAAEAAGTAVEGANVFGQANGTAMGIAPFAHLAMYKVCVTSFECFESSVLAGMDAAIQDGVDVLSLSLGDPSDHLYDDVIALGAFRAIQNGIFVSCS AGNSGPDSSSVLNEAPWILTVGASTIDREIRSTVTLGNNEQFHGQSLFQPTDFHPQQLPFVDAGAKSSASATFCDAGSLKNIDVTGKIVICQIGGNSGSV DKGVEVKANGGVGMIVINDLARGFFTTPAPHVLPASHINYKDGLAIRAYLNSTSSPTAAISFQGTLIGNVSAPQIALFSSRGPSTITPGILKPDIIGPGV SILAAWGESVDNATNSFNIISGTSMSCPHLSGVAAVIKAVHPNWSPAAIKSAILTTAYTVDQSGKPISNEQNTPAIVFDMGSGHVNPPKALSPGLVYDIQ PDDYVGYLCGLGYNDTQVSIIVQRKVKCSNESVIPEAQLNYPTFSISLSSTQQTYTRTVTNVGVPSSTYTSTILSPAGVDIKVSPSEIKFNQLEEKATYS VTFSRVGNVTGAVSQGSVVWSSSDARYNVVSTIAVVFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029570 [exp]	0	1
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029575 [exp]	2.4	0.9520
AT1G13570			F-box/RNI-like superfamily pro...		Lus10011048 [exp]	4.7	0.9419
					Lus10021618 [exp]	6.0	0.8863
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10042095 [exp]	7.1	0.9074
AT1G17930			Aminotransferase-like, plant m...		Lus10027047 [exp]	7.2	0.9230
AT5G19875			unknown protein		Lus10006311 [exp]	7.3	0.9078
AT4G38380			MATE efflux family protein (.1...		Lus10020203 [exp]	7.5	0.8899
					Lus10041636 [exp]	7.7	0.9264
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10011051 [exp]	9.4	0.8992
AT4G25180			RNA polymerase III RPC4 (.1)		Lus10000362 [exp]	9.8	0.8365

Compare expression of checked genes

Lus10029570 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.