Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12780 561 / 0 ATUGE1, UGE1 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) AT1G63180 547 / 0 UGE3 UDP-D-glucose/UDP-D-galactose 4-epimerase 3 (.1) AT4G10960 446 / 1e-155 UGE5 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) AT4G23920 445 / 1e-155 ATUGE2, UGE2 UDP-GLC 4-EPIMERASE 2, UDP-D-glucose/UDP-D-galactose 4-epimerase 2 (.1) AT1G64440 436 / 9e-152 REB1, RHD1, UGE4 UDP-GLUCOSE 4-EPIMERASE, ROOT HAIR DEFECTIVE 1, ROOT EPIDERMAL BULGER1, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G44480 225 / 1e-68 DUR DEFECTIVE UGE IN ROOT, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G30620 224 / 3e-68 MURUS4, HSR8, UXE1, MUR4 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G20460 221 / 2e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G34850 134 / 1e-36 MEE25 maternal effect embryo arrest 25, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G45310 86 / 5e-18 GAE4 UDP-D-glucuronate 4-epimerase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002246 [exp] 679 / 0 AT1G12780 592 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) Lus10003875 [exp] 455 / 2e-159 AT4G10960 616 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10001822 [exp] 449 / 6e-157 AT4G10960 615 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10023074 [exp] 440 / 6e-153 AT4G10960 585 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10032394 [exp] 377 / 8e-130 AT4G10960 494 / 8e-178 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10038423 [exp] 226 / 2e-69 AT1G30620 682 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10003496 [exp] 196 / 7e-58 AT1G30620 656 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10013107 [exp] 194 / 3e-57 AT1G30620 652 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10032391 [exp] 87 / 5e-18 AT1G02000 620 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G123700 [exp] 564 / 0 AT1G12780 641 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) Potri.001G090700 [exp] 456 / 1e-159 AT4G10960 607 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Potri.003G140900 [exp] 454 / 5e-159 AT4G10960 606 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Potri.001G459700 [exp] 216 / 2e-65 AT1G30620 730 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.011G156100 [exp] 216 / 4e-65 AT1G30620 712 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.006G022000 [exp] 211 / 8e-64 AT1G30620 676 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.016G020000 [exp] 207 / 5e-62 AT1G30620 670 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.003G114600 [exp] 84 / 3e-17 AT4G12250 587 / 0.0 UDP-D-glucuronate 4-epimerase 5 (.1) Potri.017G059100 [exp] 83 / 6e-17 AT3G23820 724 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.002G146500 [exp] 82 / 1e-16 AT1G02000 724 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10029572 pacid=23152022 polypeptide=Lus10029572 locus=Lus10029572.g ID=Lus10029572.BGIv1.0 annot-version=v1.0 ATGGAGGGGAAACTGATTCTGGTCACCGGGGGCGCTGGATTCATCGGCACACACACAGTCGTCCAGCTGCTCAAAGAAGGGTTCAGGGTTTCGATTGTTG ATAATTTCGACAACTCCTGCGAACAAGCTCTTGATAGAGTGAAAGAAGTCGTGGGTCCTGCTCTTGCTGCCAAAATCGACTTCCATTTCGTTGATCTCAG AAACAAGGATGATCTGGACAAGGTGTTTGCCAAGTCAAAATTTGATGGTGTGATTCATTTTGCTGGTAAAAAGGCTGTGGGAGAGAGTGTTCAATATCCC AGGAGTTACTTTGATAATAACTTGATTGGAACTATTAACCTGTATGAGGTCATGGCTAAGTACAACTGCAAGAAGATGGTATTTTCCTCATCGTCGACTG TTTATGGCCAACCTGAAAAGATACCATGTGTGGAGGGAACTGAGTTGAAGGCCATGAGCCCTTATGGCAGAACAAAGCTTTTCCTAGAGGAGATTGCTCG AGATATCTCGAATGCAGAACCAGACTGGCAGATCATCCTACTGAGGTACTTCAATCCAGTGGCGGCCCACAAGAGTGGTAAGATCGGTGAAGATCCTATC GGCATACCAAACAATCTCATGCCTTACATTCAGCAAGTCGCTGTCGGTAGGCTTCCTGAGCTTAATGTCTACGGTCATGATTACCCCACCAAGGATGGTA CTGCGATTCGAGACTACATCCATGTGATGGACTTAGCAGATGGTCACATTGCTGCTCTTAAGAAGCTTTTCACTCCAGACTTCAAAGGCTGCGTTCCGTA TAACTTGGGGACTGGTCGAGGAACATCGGTGCTCGAAATGGTTGCTGCATTCGAGAAAGCATCCGGCAAGAAAATCCCAACGAAGCTGTGTCCAAGAAGA GCTGGAGATGCTACAGCGGTTTATGCTGCAGTCGACAAAGCTGCGAAAGAGCTCGGTTGGAAGGCGAAATATGGGATAGAAGAGATGTGCAGAGACCAGT GGAATTGGGCAAGCAAGAACCCATGGGGGAACATGATAGGAAATTCATTAGCGACTCACCAGCCAGTCATTCGAGCTCGTCTAGGAGATTTCTATGTCCA TTTGGTTCAATCATCAAAGAATGGATTCGATTTTTGTGTGATGTTCGATTTAATCACAAACGAAAAACGAAATGGAAGGCTTCAGAAAGATAACAATATG GTGAAAATGAAGGGAATCTCACAATCGTTGACGGAGATGTGGTCGGCGACAGGTTCAACAACGGGCAATTTGATCTCTCTCGATAATGTTTCGACGATAC TTCGTCCAGAACTCCGGCGTTACGTGGAAACTCAATTCCATTGCCTCTCCCTTCACTTCAAGCCTTGCATGGATTCTGACGCTCACGGCAAAGGTGAAGG ACTTGATTGA
AA sequence Show only first row Show all	>Lus10029572 pacid=23152022 polypeptide=Lus10029572 locus=Lus10029572.g ID=Lus10029572.BGIv1.0 annot-version=v1.0 MEGKLILVTGGAGFIGTHTVVQLLKEGFRVSIVDNFDNSCEQALDRVKEVVGPALAAKIDFHFVDLRNKDDLDKVFAKSKFDGVIHFAGKKAVGESVQYP RSYFDNNLIGTINLYEVMAKYNCKKMVFSSSSTVYGQPEKIPCVEGTELKAMSPYGRTKLFLEEIARDISNAEPDWQIILLRYFNPVAAHKSGKIGEDPI GIPNNLMPYIQQVAVGRLPELNVYGHDYPTKDGTAIRDYIHVMDLADGHIAALKKLFTPDFKGCVPYNLGTGRGTSVLEMVAAFEKASGKKIPTKLCPRR AGDATAVYAAVDKAAKELGWKAKYGIEEMCRDQWNWASKNPWGNMIGNSLATHQPVIRARLGDFYVHLVQSSKNGFDFCVMFDLITNEKRNGRLQKDNNM VKMKGISQSLTEMWSATGSTTGNLISLDNVSTILRPELRRYVETQFHCLSLHFKPCMDSDAHGKGEGLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10029572 [exp]	0	1
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10002246 [exp]	1.0	0.9872
AT4G26400			RING/U-box superfamily protein...		Lus10043027 [exp]	1.4	0.9852
AT1G21000			PLATZ transcription factor fam...		Lus10000952 [exp]	1.7	0.9827
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Lus10000441 [exp]	2.6	0.9797
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011979 [exp]	2.8	0.9812
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10038896 [exp]	3.6	0.9760
AT1G27150			Tetratricopeptide repeat (TPR)...		Lus10037232 [exp]	4.0	0.9788
AT3G46130	MYB	PFG3, ATMYB111 ...	myb domain protein 48 (.1.2.3....		Lus10005886 [exp]	4.1	0.9728
AT5G03860		MLS	malate synthase (.1.2)		Lus10020565 [exp]	4.7	0.9760
AT2G27480			Calcium-binding EF-hand family...		Lus10043389 [exp]	4.8	0.9709

Compare expression of checked genes

Lus10029572 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.