Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10200 1047 / 0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) AT5G43120 498 / 7e-169 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) AT3G50030 403 / 3e-133 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) AT4G30480 52 / 5e-07 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT4G12400 50 / 4e-06 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT5G21990 49 / 8e-06 OEP61, TPR7 tetratricopeptide repeat 7, outer envelope protein 61, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G58620 48 / 2e-05 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT1G12270 47 / 3e-05 Hop1 Hop1, stress-inducible protein, putative (.1) AT4G32070 46 / 0.0001 Phox4 Phox4, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT1G62740 46 / 0.0001 Hop2 Hop2, stress-inducible protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006301 [exp] 1225 / 0 AT5G10200 1059 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Lus10024789 [exp] 454 / 3e-152 AT5G43120 533 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Lus10018706 [exp] 455 / 1e-151 AT5G43120 534 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Lus10006303 [exp] 110 / 1e-24 AT5G67360 563 / 0.0 Subtilase family protein (.1) Lus10002244 [exp] 94 / 3e-19 AT5G67360 567 / 0.0 Subtilase family protein (.1) Lus10006306 [exp] 89 / 6e-18 AT5G67360 555 / 0.0 Subtilase family protein (.1) Lus10002242 [exp] 85 / 1e-16 AT5G67360 555 / 0.0 Subtilase family protein (.1) Lus10029570 [exp] 85 / 1e-16 AT5G67360 550 / 0.0 Subtilase family protein (.1) Lus10029575 [exp] 85 / 1e-16 AT5G67360 552 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G076300 [exp] 1115 / 0 AT5G10200 1113 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Potri.007G092100 [exp] 1105 / 0 AT5G10200 1085 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Potri.002G120800 [exp] 558 / 0 AT5G43120 635 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Potri.007G052300 [exp] 545 / 0 AT5G43120 580 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Potri.001G113700 [exp] 75 / 9e-14 AT1G04110 538 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118800 [exp] 74 / 2e-13 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.019G006570 [exp] 74 / 2e-13 AT1G04110 568 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118700 [exp] 73 / 4e-13 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118500 [exp] 72 / 6e-13 AT1G04110 557 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.018G100700 [exp] 52 / 4e-07 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Lus10029573 pacid=23151998 polypeptide=Lus10029573 locus=Lus10029573.g ID=Lus10029573.BGIv1.0 annot-version=v1.0 ATGCAAAGCTCGAGCCAAGAACAGCGTATGGTGCATTCGTATCGCAATGTGGCCACAGGCTTCGCTGCTAGGCTTACACAGGAAGAAGCCAAAGCAAAGG AGAAGAAGGAAGGGTTTGTGTCAGCAAGAGTTGAGAGATCCTTGTCTCTAGATACAACTCATACTCCCGAGTTCTTGGGCCTGCTGCAAAATGTAGGCAG TGTAAGTGAATATGTACAGATTGACTTAGTTCATGGTGAACTGAGTGGGTTTACGAATTTGAAGTTGGTAATTCTGAAAATGGAAAAGGGATCTGCAGAC TGTCCATATCCAGGGTGTTTTTTCTGTGTCATGAAAGAAGGAAATCCGAGTAAGCGTAGATCAAGTATATTGAAGTTTTTCAGAGAACTTCCTTCACAAG ATGATGACGGCCAGGTGCTCCCTATCAGTGGACTTTGGAACACTGCCATGGCACATCCAAATGATCCGGAGTTTATTGAGTTGGGGATCTTTGAATGCAT GGCTGCGCTTATATGGAAGGGCTTGAAGAGTCGCCGTTGGCTTTCTCATGATCAGAACATATATATTCCTTATTATGCTGCTCATATTATTGGATCCTAT ACCATGAACATGGAGGAATTTGCGGAGAGCTCTGTCCATGCTGGGGTGATTCCTCCCTTGATTGAGCTTCTTAGGGGGAGATTGACTTGGGTTGAGCAAA GAGTTGCAGTAAGAGCTTTAGGACATTTGGCAACATATCCTAGCACTTTTCCTGCTATAGCAAGTCACGGGGAAATTCTTGAACTGTCGATTCAACTGGC AATGAGTTCACTGGAAATAGTATACTCGCACTTTTACCAATACGTTGATAGAAGGCTTAGCTATCACTGTGATTTGCTAACTCGTGGAATGGGCGGTGTT GAAATGGAGTCCAGAAAAGCAGAGGAATGGGCTAGTCAATTGCAGTGTTGGTCTCTTCAGCTTATTAATTCGTATGCTTTTAAACCCGAGTTTCTCCCAA CAATCTGTAAACCTGAATTCCTTGTGAAACTCCCGGGGATGTGGGGTGGACTTGTCAATGAAAACTCTCCTGCTGGAATTGGCTTGCTGAGAACAGTTTG CCATCATAAGCTTGGTAGGGGACCTGTGGCTAGCTGTCCTGGTATTGTTGAGGCACTGTGTAATATTGCTCGGTCATCAGATGATTGGCAGTATATGGCT ATCGAATGTCTTCTTTGGTTGATCCAAGACCCAAGTACATGCCAAAAGGTTATAGACAAAGCAGCACCTGCACTTGTAGACCTTGCTGAGATAACAGCCG TTGGAGATCACAAAAAGCTTGGGGATTCAATAGTCAGTGTCCTCCAAGAGTGTGTTCAATCACACGGGAGTGAGGATTGGATGAGCATCCGAGTGAAAGA AGCAATAGATGAATTGCTGAAGTCCAAACAAAGATTGAAATGGGAAAAGAGCATAGTGAAGGAGGATCTCCACATTAAGCAGGCAGCCGGTTTAGTTGTT AAACTCGAAGGAAATTCCTTGTTCTCATCAGGAAATATAACTGGAGCTGTGGCAAAGTACTCTGAAGCATTGGACTTATGTCCGGTCCGATCAAAGAAGG AGAGAGTTGTTTTGTACAGCAATCGAGCTCAGTGCTATCTCCTTCTACAGCAACCGCAGGCTGCAATAAGCGACGCCACACGTGCACTTTGTCTGCACAC CCCACTCAACCGCCATGCGAAAAGCCTCTGGAGAAGAGCTCAGGCTTACGATATGCTGGGCTTAGCAAAAGAAAGTTTGTTAGATGCCATTCTCTTCATC AACGAATGCTCCCAGTCGAACGATCCCGATCTCTGTCTGAGGCAGAACAAAGTCCCCGACTATGCAGAACGGCTGGTGAAGAAGCAGATGCGTACCGCCT GGTTGTTTAGGGAGGCAGCCATCAAGCATGGAGGCGTCCAGTGCGAGGGTGACGCTCGTGCATCGTACGGCCAAGAAAGTGACGGTTCGGAATGGGAAAC CGCTAGCGAAAGCGATGTAGGAAACGATGACGGTAGGGATGAAATAGCGGGTGATGATGAAGATGACGGTGACATCGAATGGAGAAACGAAGACAAGAGG AAAGGCAAGTATGATCGATCACCATTGAAAGGGACAGGACCAAGTGTGCAAACAAGTTTGTGA
AA sequence Show only first row Show all	>Lus10029573 pacid=23151998 polypeptide=Lus10029573 locus=Lus10029573.g ID=Lus10029573.BGIv1.0 annot-version=v1.0 MQSSSQEQRMVHSYRNVATGFAARLTQEEAKAKEKKEGFVSARVERSLSLDTTHTPEFLGLLQNVGSVSEYVQIDLVHGELSGFTNLKLVILKMEKGSAD CPYPGCFFCVMKEGNPSKRRSSILKFFRELPSQDDDGQVLPISGLWNTAMAHPNDPEFIELGIFECMAALIWKGLKSRRWLSHDQNIYIPYYAAHIIGSY TMNMEEFAESSVHAGVIPPLIELLRGRLTWVEQRVAVRALGHLATYPSTFPAIASHGEILELSIQLAMSSLEIVYSHFYQYVDRRLSYHCDLLTRGMGGV EMESRKAEEWASQLQCWSLQLINSYAFKPEFLPTICKPEFLVKLPGMWGGLVNENSPAGIGLLRTVCHHKLGRGPVASCPGIVEALCNIARSSDDWQYMA IECLLWLIQDPSTCQKVIDKAAPALVDLAEITAVGDHKKLGDSIVSVLQECVQSHGSEDWMSIRVKEAIDELLKSKQRLKWEKSIVKEDLHIKQAAGLVV KLEGNSLFSSGNITGAVAKYSEALDLCPVRSKKERVVLYSNRAQCYLLLQQPQAAISDATRALCLHTPLNRHAKSLWRRAQAYDMLGLAKESLLDAILFI NECSQSNDPDLCLRQNKVPDYAERLVKKQMRTAWLFREAAIKHGGVQCEGDARASYGQESDGSEWETASESDVGNDDGRDEIAGDDEDDGDIEWRNEDKR KGKYDRSPLKGTGPSVQTSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10200			ARM-repeat/Tetratricopeptide r...		Lus10029573 [exp]	0	1
AT3G20475		ATMSH5	MUTS-homologue 5 (.1)		Lus10021545 [exp]	2.6	0.8775
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Lus10006590 [exp]	2.8	0.8609
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Lus10015913 [exp]	9.2	0.8400
AT1G30470			SIT4 phosphatase-associated fa...		Lus10023354 [exp]	10.5	0.8429
AT1G69060			Chaperone DnaJ-domain superfam...		Lus10036825 [exp]	10.7	0.8283
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Lus10040400 [exp]	13.7	0.8093
AT1G68020		ATTPS6	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10021805 [exp]	14.5	0.7782
AT5G61060		HDA5, HDA05, AT...	histone deacetylase 5 (.1.2)		Lus10034689 [exp]	14.8	0.8293
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10023537 [exp]	15.0	0.7899
AT5G38840	FHA		SMAD/FHA domain-containing pro...		Lus10005098 [exp]	15.9	0.8090

Compare expression of checked genes

Lus10029573 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.