Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16280 377 / 1e-122 FCA RNA binding;abscisic acid binding (.1.2.3.4) AT2G47310 206 / 3e-58 flowering time control protein-related / FCA gamma-related (.1) AT1G03457 170 / 3e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G03110 167 / 6e-45 AtRBP-DR1 RNA-binding protein-defense related 1 (.1.2) AT2G18510 88 / 2e-18 EMB2444 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G00830 81 / 7e-16 LIF2 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT2G44710 80 / 3e-15 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G58470 78 / 4e-15 XF41, ATRBP1 RNA-binding protein 1 (.1) AT5G50250 76 / 7e-15 CP31B chloroplast RNA-binding protein 31B (.1) AT3G13224 73 / 4e-14 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006304 [exp] 497 / 1e-171 AT4G16280 322 / 7e-106 RNA binding;abscisic acid binding (.1.2.3.4) Lus10037787 [exp] 469 / 9e-157 AT4G16280 391 / 5e-127 RNA binding;abscisic acid binding (.1.2.3.4) Lus10017070 [exp] 464 / 1e-154 AT4G16280 376 / 2e-121 RNA binding;abscisic acid binding (.1.2.3.4) Lus10006305 [exp] 202 / 1e-60 AT4G16280 68 / 1e-13 RNA binding;abscisic acid binding (.1.2.3.4) Lus10005926 [exp] 156 / 7e-41 AT4G03110 548 / 0.0 RNA-binding protein-defense related 1 (.1.2) Lus10041728 [exp] 94 / 3e-20 AT2G18510 436 / 1e-153 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032124 [exp] 82 / 2e-16 AT5G40490 307 / 3e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10029372 [exp] 81 / 5e-16 AT3G52380 269 / 6e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10014562 [exp] 80 / 1e-15 AT5G40490 301 / 9e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G147900 [exp] 470 / 1e-155 AT4G16280 338 / 3e-107 RNA binding;abscisic acid binding (.1.2.3.4) Potri.002G192900 [exp] 282 / 1e-86 AT2G47310 273 / 1e-85 flowering time control protein-related / FCA gamma-related (.1) Potri.014G135540 [exp] 173 / 5e-47 AT4G03110 513 / 0.0 RNA-binding protein-defense related 1 (.1.2) Potri.002G214000 [exp] 170 / 2e-46 AT4G03110 506 / 4e-179 RNA-binding protein-defense related 1 (.1.2) Potri.007G028300 [exp] 93 / 5e-20 AT2G18510 453 / 4e-160 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G051500 [exp] 86 / 3e-17 AT2G44710 627 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G139700 [exp] 85 / 1e-16 AT2G44710 585 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.016G090700 [exp] 80 / 2e-16 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G340800 [exp] 80 / 2e-16 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.005G125300 [exp] 79 / 2e-15 AT2G18510 412 / 3e-144 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0680 [flax] [poplar] WW PF00397 [flax] [poplar] WW WW domain CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10029574 pacid=23152108 polypeptide=Lus10029574 locus=Lus10029574.g ID=Lus10029574.BGIv1.0 annot-version=v1.0 ATGAATCCTTTCCCCGATAACGTCGTCAGCAGTGAAGGCAGCTACAATAATCGTAGTTCTCACGGTTATCGTGCCGGCGGTGGCGGTGGTGGAAAGCGTG CGTTTGAAAGCCCTCCGCAGCTTCCTCCAGGTGGATTTGGCGGTACAGGTGGCTTCCCTTCAATGGGAGCTGGTGGAGGTTTCCGTCAGGTTGAAGATGG TGACGGTGGAGGTGGACACTTTGGCGCTACTTACCCGGGATTGTCCCCGCCACCGCCGTTGTCTGGACAGAAAAGAAGTCATCCTATGTCTGGCAGAGGA GGCTCTCCTACCAGTGATCGTTCTGATGGAGGTAACTTTGCCAAACTTTTCGTGGGATCCGTTCCAAGGACAGCTACTGAAGAGGAGATTCGGCCTCTCT TTGAGAAAGAAGGGAATGTCATTGAGGTTGCCTTGATCAAAGACAAAAGAACTGGTCAGCAGCAAGGTTGTTGCTTTGTGAAATATGCAACTATAGAAGA GGCTGATAGGGCTGTAAGAGCTTTGCACAATCAGCATACTCTACCTGGAGGAGTTGGCCCAATTCAAGTCCGATATGCAGATGGAGAACGAGAACGCCTA GGTGCTGTCGAGTACAAGTTGTTTGTCGGGTCTCTAAATAAGCAGGCTACAGAAAAGGAAGTTGAGGAAATTTTTGCCCCATATGGTCGGGTTGAAGATG TTTATCTTATGCGTGATGAAATGAAACAAAGTCGTGGATGTGGATTTGTTAAATATTCCCAGAGAGATACGGCACTAGCAGCTATAAATTCTCTTAATGG AACTTATACCATGAGAGGCTGTAATCAACCACTTACTGTCCGTTTTGCTGATCCGAAGAGACCAAAACCTGGAGATTCAAGCTTGCCAAGACGTGGCGGT CCTGGTTTTGAAGATCCAGGTGATCGTGCCCCTCCTAATCCCTGGCATCCAATTACTCCTAAGCAGACAGGGCCTCCTCCCGGTGCTGGTGTTCATGGCC TGGGGAATCCGTTGCCTCCTTTCAATCAGGGTGGTTTTGGTGGCCCTTCTGATGGCACTTCTCAAGAAGCCTTTTTCTCTCCTGGAAATCGGCCATTGCA GCAAGTCGCACCCACTGGCCAGCAGATACAACCAACGCAGAAACCTGTTCGATCCCCTCAGAGTTTACAAGCTTCCCTTCCATTGAACCCTCATGTTGCA TCAAATTACTCACAAACACAAATGCCCCATCCTGGTCAACAGAACCTGCCATCATACAGTCAAGCATTGCCATCGCAACAGTTGCATGGATTCACTGCCC CTGCTGTCTCTGCTGCTGCACCGACGAACCCCTTAACTATCAGTTTGCACTCCCAATCAAGGCCAGGTGCTGCCCCGAATCCACCACAGCAGTCTGCTCC AGCTCAGCAGCAACCTCAACCTTTGCAGCAGCAATCCCCTTCCCAGTTAGCTCAAATGTTATGTCAGCAGAAGCAAACTCTACAAGCGAGCTTTCAGTCT TCTCAGCAAGCTTTCTCTCAGTTGCAACAGCAAGTTCAGATGATGCAATCATCCTTTTTGTTGAAGTGGGCTGGAATGCCACAACACACAGTTGCTAGTT CTCCCGCCACTACACTAGCTTTGGATGTGCCTCCGACTGCTAAAATTGCTCCAGTAGCGCAGCCTGCAGCGGCTAAGCACAGTAACTGGACTGAGCATAC TTCTCCTGAAGGATTCAAGTACTATTACAACAATGTGACGGGGGAAAGCCAGTGGGAGAAGCCAGATGAGCTCATATCAACCGAACAGCAGCAATCACAA ACAAAGCCTTTAGCTCAACTTCCTCAAGCTCAGCAGAACCCCGGAGCTCCACAGAACCATCAAGCCGTACAAGGACAATCAATGCACCCAGGAGCTCCAC AGAACCAGCAAGCCGGTCAAGGAAATCCAATGCAGTTTCCTGCACAGTTCCAGACACAATATCGTCCACAGCATCCTACTCAACAACCTTCTTTTCATTC AGGGGAGCATGGTTATGCACAGATGCCCGTCCCTGCTGACTCAGCTAATGATCAAACAAAGCTCCAGTTTCAGCAGGCTGCTCAAGATTGGATGTGGAAG AACAAGCCTACAGGTTCGGATATTGAGTCATTAGAGAATCCATCAACTTCTGGCTATTTTTTGTAA
AA sequence Show only first row Show all	>Lus10029574 pacid=23152108 polypeptide=Lus10029574 locus=Lus10029574.g ID=Lus10029574.BGIv1.0 annot-version=v1.0 MNPFPDNVVSSEGSYNNRSSHGYRAGGGGGGKRAFESPPQLPPGGFGGTGGFPSMGAGGGFRQVEDGDGGGGHFGATYPGLSPPPPLSGQKRSHPMSGRG GSPTSDRSDGGNFAKLFVGSVPRTATEEEIRPLFEKEGNVIEVALIKDKRTGQQQGCCFVKYATIEEADRAVRALHNQHTLPGGVGPIQVRYADGERERL GAVEYKLFVGSLNKQATEKEVEEIFAPYGRVEDVYLMRDEMKQSRGCGFVKYSQRDTALAAINSLNGTYTMRGCNQPLTVRFADPKRPKPGDSSLPRRGG PGFEDPGDRAPPNPWHPITPKQTGPPPGAGVHGLGNPLPPFNQGGFGGPSDGTSQEAFFSPGNRPLQQVAPTGQQIQPTQKPVRSPQSLQASLPLNPHVA SNYSQTQMPHPGQQNLPSYSQALPSQQLHGFTAPAVSAAAPTNPLTISLHSQSRPGAAPNPPQQSAPAQQQPQPLQQQSPSQLAQMLCQQKQTLQASFQS SQQAFSQLQQQVQMMQSSFLLKWAGMPQHTVASSPATTLALDVPPTAKIAPVAQPAAAKHSNWTEHTSPEGFKYYYNNVTGESQWEKPDELISTEQQQSQ TKPLAQLPQAQQNPGAPQNHQAVQGQSMHPGAPQNQQAGQGNPMQFPAQFQTQYRPQHPTQQPSFHSGEHGYAQMPVPADSANDQTKLQFQQAAQDWMWK NKPTGSDIESLENPSTSGYFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10029574 [exp]	0	1
AT5G42220			Ubiquitin-like superfamily pro...		Lus10021830 [exp]	1.7	0.8967
					Lus10003602 [exp]	2.0	0.8896
AT1G68990		MGP3	male gametophyte defective 3 (...		Lus10036844 [exp]	2.4	0.8816
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10031501 [exp]	3.2	0.8604
AT5G43680			unknown protein		Lus10040152 [exp]	3.5	0.8653
AT3G44370			Membrane insertion protein, Ox...		Lus10026414 [exp]	7.5	0.8444
AT1G04300			TRAF-like superfamily protein ...		Lus10021218 [exp]	10.4	0.8513
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Lus10037915 [exp]	14.3	0.8234
AT2G11000		ATMAK10	MAK10 homologue (.1.2)		Lus10038121 [exp]	15.4	0.8290
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10040775 [exp]	17.1	0.7706

Compare expression of checked genes

Lus10029574 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.