Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04110 523 / 4e-176 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT5G67360 521 / 2e-175 ARA12 Subtilase family protein (.1) AT3G14067 509 / 2e-170 Subtilase family protein (.1) AT2G05920 506 / 2e-169 Subtilase family protein (.1) AT2G04160 488 / 3e-162 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT4G34980 483 / 1e-160 SLP2 subtilisin-like serine protease 2 (.1) AT3G14240 481 / 7e-160 Subtilase family protein (.1) AT5G59810 476 / 1e-157 ATSBT5.4 Subtilase family protein (.1) AT1G01900 466 / 7e-154 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT5G51750 441 / 3e-144 ATSBT1.3 subtilase 1.3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029570 [exp] 1439 / 0 AT5G67360 550 / 0.0 Subtilase family protein (.1) Lus10006306 [exp] 1184 / 0 AT5G67360 555 / 0.0 Subtilase family protein (.1) Lus10002244 [exp] 1150 / 0 AT5G67360 567 / 0.0 Subtilase family protein (.1) Lus10006303 [exp] 1134 / 0 AT5G67360 563 / 0.0 Subtilase family protein (.1) Lus10002242 [exp] 1060 / 0 AT5G67360 555 / 0.0 Subtilase family protein (.1) Lus10006310 [exp] 1047 / 0 AT5G67360 542 / 0.0 Subtilase family protein (.1) Lus10029580 [exp] 1019 / 0 AT5G67360 536 / 0.0 Subtilase family protein (.1) Lus10006307 [exp] 1016 / 0 AT5G67360 532 / 2e-179 Subtilase family protein (.1) Lus10028893 [exp] 782 / 0 AT1G04110 580 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G006570 [exp] 835 / 0 AT1G04110 568 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118500 [exp] 835 / 0 AT1G04110 557 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.001G113700 [exp] 835 / 0 AT1G04110 538 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118700 [exp] 796 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118800 [exp] 789 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.014G074600 [exp] 575 / 0 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.002G256300 [exp] 526 / 3e-177 AT1G04110 1020 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.006G141200 [exp] 514 / 1e-172 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.003G067000 [exp] 505 / 5e-169 AT3G14067 969 / 0.0 Subtilase family protein (.1) Potri.004G173900 [exp] 501 / 1e-167 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10029575 pacid=23152015 polypeptide=Lus10029575 locus=Lus10029575.g ID=Lus10029575.BGIv1.0 annot-version=v1.0 ATGAAAGCCTTTCTCATCATTTCCCTTACTTTAGCTTCCGCTTTCTTCTCCTTCCAGGAAGCATCAGCTTCTGGGAAAACCAAGTTAGAAACTTATATTG TGTTTGTGGAGAAACCAGAGAGCGTCGCACAATCAACTGATTTTGATTTCAATGGCTGGTACAAAACATTCCTTCCTGAAACTGTGTTAAGCTCAAGCGA CGAAGAGCGCATGGTGCATTCATATCAAAAGGTGATCACGGGCTTTGCCGCTAAGCTTACACAAGAAGAAGCCAAAGCAATGGAGAAGAAGAACGGATTT GTGTCAGCAAGACTTGATAGAACCGTGTCTCTGCATACAACTCACACTCCCAAGTTCCTGGGTCTGCAGCAAAATCTAGGTGGTTGGAACTCTTCAAATT TTGGCAAAGGAATGATCATAGGTATGATTGACAGTGGCATCAAGTTTGATCATCCTTCGTTTAGCGACGAAGGTATGCCTGCACCTCCTGCAAAATGGAA AGGCAAGTGTGAGATCAATGGTAAGATGACTTGTAACAATAAGCTCATTGGTGCTAGAAGCTTTCCCACTGCGGGGAATCTTTCAGAAGAGGTTTTCCAT GGAACTCATACCGCTGCAGAAGCTGCTGGAACTGCTGTGGAAGGTGCCAATGTGTTTGGACAAGCTAATGGGACAGCAATGGGGATCGCCCCGTTTGCCC ACTTGGCGATGTACAAGGTCTGTGTAACTAGTTTTGAATGCTTTGAGAGTTCGGTATTGGCAGGAATGGATGCTGCTATACAGGATGGTGTGGATGTGCT TTCACTGTCACTTGGAGATCCATCAGATCATCTTTATGATGATGTAATTGCATTGGGTGCATTCAGAGCCATCCAAAATGGTATCTTTGTGAGCTGCTCA GCAGGCAACAGTGGACCAGATAGTTCTTCTGTATTAAATGAGGCACCTTGGATTCTAACAGTTGGAGCAAGTACCATTGATAGGGAAATCAGGTCAACAG TGACATTAGGTAACAATGAGCAATTTCACGGCCAATCCCTTTTCCAGCCTACGGACTTTCATCCACAGCAATTGCCATTTGTCGATGCTGGCGCGAAAAG CAGTGCTTCAGCAACTTTTTGTGACGCAGGATCACTAAAGAACATCGACGTTACAGGCAAGATTGTAATCTGCCAAATTGGAGGTAATTCTGGATCAGTT GACAAAGGAGTAGAAGTAAAAGCAAATGGTGGAGTCGGCATGATCGTAATCAATGATTTGGCCCGAGGGTTTTTCACTACACCTGCACCCCATGTCCTTC CTGCATCGCATATCAATTACAAGGACGGATTGGCAATCAGAGCTTACTTGAACTCCACATCATCTCCTACTGCAGCAATCTCATTCCAAGGTACCTTGAT CGGTAATGTGAGTGCACCACAAATAGCTTTGTTTTCATCTAGAGGTCCCAGCACAATAACTCCAGGGATCCTGAAACCTGACATCATTGGTCCTGGGGTG AGCATTTTAGCAGCATGGGGAGAATCAGTTGACAATGCTACAAATTCATTCAATATAATCTCGGGAACTTCGATGTCTTGTCCACATCTTAGCGGTGTTG CAGCTGTAATCAAGGCAGTGCACCCAAACTGGTCTCCTGCTTCCATAAAGTCGGCCATTTTAACCACTGCTTACACAGTTGACCAAAGTGGGAAGCCAAT CTCCAATGAGCAAAATACCCCTGCTATTGTCTTTGATATGGGTTCTGGCCATGTCAACCCACCAAAAGCCTTGAGTCCTGGCTTGGTATACGATATCCAA CCGGATGACTACGTCGGCTATCTCTGTGGTTTGGGTTACAATGACACACAGGTAAGCATAATCGTGCAGCGAAAAGTGAAGTGCTCGAATGAATCTGTCA TACCAGAGGCTCAATTGAACTACCCGACATTTTCTATCTCGTTAAGTTCTACTCAACAGACCTATACCAGAACAGTTACTAATGTTGGTGTGCCTAGCTC AACTTACACAAGCAAGGTATTGTCACCAGCTGGCGTGGATATTAAAATCAGACCGAGTGAAATTAAGTTCAACCAGCTGGAAGAGAAAGCAACATATTCC GTAACATTCAGCAGAGTGGGAAATGTGACAGGAGCTGTAAGCCAAGGTTCCGTGGTGTGGTCATCATCTGATGCTCGCTACAATGTCGTGAGCACAATTG CTGTGGTATTTGTTTGA
AA sequence Show only first row Show all	>Lus10029575 pacid=23152015 polypeptide=Lus10029575 locus=Lus10029575.g ID=Lus10029575.BGIv1.0 annot-version=v1.0 MKAFLIISLTLASAFFSFQEASASGKTKLETYIVFVEKPESVAQSTDFDFNGWYKTFLPETVLSSSDEERMVHSYQKVITGFAAKLTQEEAKAMEKKNGF VSARLDRTVSLHTTHTPKFLGLQQNLGGWNSSNFGKGMIIGMIDSGIKFDHPSFSDEGMPAPPAKWKGKCEINGKMTCNNKLIGARSFPTAGNLSEEVFH GTHTAAEAAGTAVEGANVFGQANGTAMGIAPFAHLAMYKVCVTSFECFESSVLAGMDAAIQDGVDVLSLSLGDPSDHLYDDVIALGAFRAIQNGIFVSCS AGNSGPDSSSVLNEAPWILTVGASTIDREIRSTVTLGNNEQFHGQSLFQPTDFHPQQLPFVDAGAKSSASATFCDAGSLKNIDVTGKIVICQIGGNSGSV DKGVEVKANGGVGMIVINDLARGFFTTPAPHVLPASHINYKDGLAIRAYLNSTSSPTAAISFQGTLIGNVSAPQIALFSSRGPSTITPGILKPDIIGPGV SILAAWGESVDNATNSFNIISGTSMSCPHLSGVAAVIKAVHPNWSPASIKSAILTTAYTVDQSGKPISNEQNTPAIVFDMGSGHVNPPKALSPGLVYDIQ PDDYVGYLCGLGYNDTQVSIIVQRKVKCSNESVIPEAQLNYPTFSISLSSTQQTYTRTVTNVGVPSSTYTSKVLSPAGVDIKIRPSEIKFNQLEEKATYS VTFSRVGNVTGAVSQGSVVWSSSDARYNVVSTIAVVFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029575 [exp]	0	1
AT1G13570			F-box/RNI-like superfamily pro...		Lus10011048 [exp]	1.7	0.9666
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029570 [exp]	2.4	0.9520
AT4G15620			Uncharacterised protein family...		Lus10041528 [exp]	3.7	0.9513
AT2G38140		PSRP4	plastid-specific ribosomal pro...		Lus10004829 [exp]	4.2	0.9424
AT1G14960			Polyketide cyclase/dehydrase a...		Lus10042489 [exp]	4.7	0.9654
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10030480 [exp]	6.0	0.9628
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10039891 [exp]	6.6	0.9565
AT3G45070			P-loop containing nucleoside t...		Lus10034079 [exp]	6.7	0.8895
AT4G38380			MATE efflux family protein (.1...		Lus10020203 [exp]	7.6	0.9049
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10011051 [exp]	7.7	0.9208

Compare expression of checked genes

Lus10029575 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.