Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67360 177 / 1e-51 ARA12 Subtilase family protein (.1) AT1G04110 174 / 3e-50 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT2G04160 172 / 2e-49 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT3G14240 166 / 2e-47 Subtilase family protein (.1) AT2G05920 163 / 2e-46 Subtilase family protein (.1) AT5G58840 159 / 5e-45 Subtilase family protein (.1) AT4G26330 159 / 7e-45 ATSBT3.18, UNE17 UNFERTILIZED EMBRYO SAC 17, Subtilisin-like serine endopeptidase family protein (.1) AT5G59130 156 / 4e-44 Subtilase family protein (.1.2) AT4G00230 154 / 3e-43 XSP1 xylem serine peptidase 1 (.1) AT5G59120 153 / 5e-43 ATSBT4.13 subtilase 4.13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002242 [exp] 401 / 3e-137 AT5G67360 555 / 0.0 Subtilase family protein (.1) Lus10006310 [exp] 379 / 4e-128 AT5G67360 542 / 0.0 Subtilase family protein (.1) Lus10006307 [exp] 366 / 4e-123 AT5G67360 532 / 2e-179 Subtilase family protein (.1) Lus10006306 [exp] 361 / 8e-119 AT5G67360 555 / 0.0 Subtilase family protein (.1) Lus10029580 [exp] 353 / 3e-118 AT5G67360 536 / 0.0 Subtilase family protein (.1) Lus10029575 [exp] 351 / 2e-117 AT5G67360 552 / 0.0 Subtilase family protein (.1) Lus10029570 [exp] 350 / 2e-117 AT5G67360 550 / 0.0 Subtilase family protein (.1) Lus10002244 [exp] 357 / 6e-117 AT5G67360 567 / 0.0 Subtilase family protein (.1) Lus10006303 [exp] 337 / 5e-112 AT5G67360 563 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G006570 [exp] 251 / 3e-79 AT1G04110 568 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118500 [exp] 249 / 3e-78 AT1G04110 557 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.001G113700 [exp] 247 / 2e-77 AT1G04110 538 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118800 [exp] 226 / 1e-69 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118700 [exp] 223 / 1e-68 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.014G074600 [exp] 191 / 1e-56 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.014G171600 [exp] 184 / 6e-54 AT2G04160 986 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.002G256300 [exp] 181 / 4e-53 AT1G04110 1020 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.011G050000 [exp] 172 / 1e-49 AT2G04160 806 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050300 [exp] 169 / 1e-48 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029576 pacid=23152112 polypeptide=Lus10029576 locus=Lus10029576.g ID=Lus10029576.BGIv1.0 annot-version=v1.0 ATGTCATGTCCACATCTTAGCGGTGTTGCAACTTTAATCAAGGCAATGCATCCAGACTGGTCACCTGCTGCAATAAAGTCAGCGATTTTAACCACTGCTT ACACAAAGGACCTTAGTGGTAAGCCGATCTCCAATGAGCAGAATTCTCCTGCAACTGACTTTGATATGGGTGCTGGACATGTGAACCCACCTAAAGCTAT GGATCCAGGTTTGATATATGATATCCAACTGGATGATTATGTTGCGTATATCTGCTGTTTGGGTTACAACGACACACAGGTAAGAATGATCGTGCAGCGC AAGGTAAAGTGCTCGAATGAATCTTGCATACCCGGTGCTCAACTGAACTACCCTACATTTTCTATCTCACTGGGATCTAGTCCACAAACACATACCAGAA CAGTCATTAATGTTGGCATACCTAACTCGACTTACACCAGCAAGATATTCCCACCAGAAGGCGTCGATGTTAAAGTCGAGCCAAGTGAGTTTAACTTCAA GGAGCTGAAAGAGAAAGCAACGTATTCGATAACATTCAATAGAGTGGGAAATGCGACAGGAAGTATGAGTCAAGGTTCCTTGGTGTGGTCATCTACTGAT GACAGGTACAAAGTTGCGAGCACAATTGCTGTTGTATTTGTTTGA
AA sequence Show only first row Show all	>Lus10029576 pacid=23152112 polypeptide=Lus10029576 locus=Lus10029576.g ID=Lus10029576.BGIv1.0 annot-version=v1.0 MSCPHLSGVATLIKAMHPDWSPAAIKSAILTTAYTKDLSGKPISNEQNSPATDFDMGAGHVNPPKAMDPGLIYDIQLDDYVAYICCLGYNDTQVRMIVQR KVKCSNESCIPGAQLNYPTFSISLGSSPQTHTRTVINVGIPNSTYTSKIFPPEGVDVKVEPSEFNFKELKEKATYSITFNRVGNATGSMSQGSLVWSSTD DRYKVASTIAVVFV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029576 [exp]	0	1
AT4G26330		ATSBT3.18, UNE1...	UNFERTILIZED EMBRYO SAC 17, Su...		Lus10029569 [exp]	10.2	0.7079
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Lus10012228 [exp]	12.4	0.8059
AT1G26570		UGD1, ATUGD1	UDP-glucose dehydrogenase 1 (....		Lus10021639 [exp]	19.2	0.8038
AT1G24590	AP2_ERF	ESR2, DRNL, SOB...	FOR SUPPRESSOR OF PHYTOCHROMEB...		Lus10017907 [exp]	25.3	0.7527
					Lus10015828 [exp]	27.3	0.7951
AT5G15430			Plant calmodulin-binding prote...		Lus10003472 [exp]	32.2	0.7939
AT1G68470			Exostosin family protein (.1)		Lus10005567 [exp]	35.7	0.7914
AT1G11340			S-locus lectin protein kinase ...		Lus10036139 [exp]	35.8	0.7919
AT2G27410	B3		Domain of unknown function (DU...		Lus10027284 [exp]	42.7	0.7906
AT5G15430			Plant calmodulin-binding prote...		Lus10000141 [exp]	45.3	0.7903

Compare expression of checked genes

Lus10029576 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.