Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14067 179 / 7e-51 Subtilase family protein (.1) AT5G67360 176 / 1e-49 ARA12 Subtilase family protein (.1) AT1G04110 175 / 3e-49 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT5G03620 174 / 5e-49 Subtilisin-like serine endopeptidase family protein (.1) AT5G67090 171 / 8e-48 Subtilisin-like serine endopeptidase family protein (.1) AT4G00230 165 / 9e-46 XSP1 xylem serine peptidase 1 (.1) AT5G59810 165 / 1e-45 ATSBT5.4 Subtilase family protein (.1) AT5G59090 162 / 5e-45 ATSBT4.12 subtilase 4.12 (.1.2.3) AT4G34980 163 / 6e-45 SLP2 subtilisin-like serine protease 2 (.1) AT1G01900 162 / 1e-44 SBTI1.1, ATSBT1.1 subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006307 [exp] 518 / 0 AT5G67360 532 / 2e-179 Subtilase family protein (.1) Lus10006310 [exp] 444 / 7e-152 AT5G67360 542 / 0.0 Subtilase family protein (.1) Lus10029580 [exp] 437 / 3e-149 AT5G67360 536 / 0.0 Subtilase family protein (.1) Lus10002242 [exp] 414 / 2e-140 AT5G67360 555 / 0.0 Subtilase family protein (.1) Lus10002243 [exp] 398 / 5e-139 AT1G04110 248 / 4e-75 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10006303 [exp] 410 / 7e-139 AT5G67360 563 / 0.0 Subtilase family protein (.1) Lus10006306 [exp] 414 / 1e-137 AT5G67360 555 / 0.0 Subtilase family protein (.1) Lus10029570 [exp] 404 / 1e-136 AT5G67360 550 / 0.0 Subtilase family protein (.1) Lus10029575 [exp] 404 / 1e-136 AT5G67360 552 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G006570 [exp] 318 / 4e-103 AT1G04110 568 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.001G113700 [exp] 304 / 2e-97 AT1G04110 538 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118700 [exp] 296 / 1e-94 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118800 [exp] 289 / 8e-92 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118500 [exp] 287 / 4e-91 AT1G04110 557 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.014G074600 [exp] 204 / 1e-59 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.007G045100 [exp] 187 / 1e-53 AT5G67090 727 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.009G100500 [exp] 182 / 5e-52 AT4G34980 541 / 0.0 subtilisin-like serine protease 2 (.1) Potri.014G026600 [exp] 181 / 1e-51 AT5G67360 546 / 0.0 Subtilase family protein (.1) Potri.002G124500 [exp] 179 / 1e-50 AT5G67090 577 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10029577 pacid=23152064 polypeptide=Lus10029577 locus=Lus10029577.g ID=Lus10029577.BGIv1.0 annot-version=v1.0 ATGTTCGACTTGATAGGCTCGCGAGCTGGCTTGAGCTCGAGATTCAACTCGAATACTAACTCGACCAAAAGTGATGACTTGAACACTTACATTGTGTTCT TGGAGAAACCAGAAGGCCTGAGTCTCACAGAGTCGAGTGATGATTTACATGGCTGGTACGACACATTCCTTCCCGAAACAACTACCTTCAGCTCGAGCGA AGATCAACAGAGTGTGGTGCATTACTATCGCAATGTGATCACAGGCTTTGCTGCTGGACTTACACCAGAGGAAGTCAAAGCAATGGAGCAGAAGGAAGGG TTTGTTTCAGCAAGAGTTGAGAGATCCTTGTCTCTACATACTACTCACACTCCCAAGTTCTTGGGCCTGCAGCAAATTCTTCAGCAGAAAAATATAGGAG TAAACTATTGGAGCTCTTCGAATCTCGGCAGAGGGCTGATCATTGGCCTTCTTGACAGTGGCATCAAGCACGATCACCCTTCGTTTCGCGATGAAGGTAT GCCCCCACCACCTGCAAGATGGAAAAGTAAGTGTGAGATCAATGGTAAGATGACTTGTAACAACAAGCTCATCGGTGCTAGAAGCTTTGTCTCTCCGGGG AATCTTACCGACGAGGCCTTACATGGAAGTCATACTGCGGGAGAAGCTTGTGGGATTGCTATGGAAGGTGCCAATGTGTTTGGACAAGCTAATGGAACTG CGATGGGGATTGCACCGTTTGCCCACTTGGCGATGTACAAGGTTTGTAGAACTAAATCTGAATGCTTTGATTATAACATATTGGCAGGAATGGATGCTGC TATAGAGGACGGTGTTGATGTGCTGTCGTCGTCGCTTGGATTTACAATAGAGCATTTGTATGATGATTTTATTGCATTGGGTACATTCAGAGCCATTCAA AATGGTACTTTCTTCCCCCCCAGCCATTGTTGCCGATTGTCGATGCTGGCATGA
AA sequence Show only first row Show all	>Lus10029577 pacid=23152064 polypeptide=Lus10029577 locus=Lus10029577.g ID=Lus10029577.BGIv1.0 annot-version=v1.0 MFDLIGSRAGLSSRFNSNTNSTKSDDLNTYIVFLEKPEGLSLTESSDDLHGWYDTFLPETTTFSSSEDQQSVVHYYRNVITGFAAGLTPEEVKAMEQKEG FVSARVERSLSLHTTHTPKFLGLQQILQQKNIGVNYWSSSNLGRGLIIGLLDSGIKHDHPSFRDEGMPPPPARWKSKCEINGKMTCNNKLIGARSFVSPG NLTDEALHGSHTAGEACGIAMEGANVFGQANGTAMGIAPFAHLAMYKVCRTKSECFDYNILAGMDAAIEDGVDVLSSSLGFTIEHLYDDFIALGTFRAIQ NGTFFPPSHCCRLSMLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10029577 [exp]	0	1
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10025074 [exp]	5.5	0.6743
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10024816 [exp]	5.5	0.6904
					Lus10000377 [exp]	8.1	0.6804
AT1G07260		UGT71C3	UDP-glucosyl transferase 71C3 ...		Lus10010474 [exp]	9.9	0.6500
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10022104 [exp]	10.6	0.6740
AT4G02270		RHS13	root hair specific 13 (.1)		Lus10041926 [exp]	18.2	0.6616
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10011112 [exp]	22.4	0.6213
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Lus10028996 [exp]	26.2	0.6064
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Lus10040948 [exp]	26.5	0.6185
AT5G59190			subtilase family protein (.1)		Lus10040251 [exp]	26.7	0.6562

Compare expression of checked genes

Lus10029577 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.