Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78010 645 / 0 tRNA modification GTPase, putative (.1) AT3G12080 74 / 2e-13 EMB2738 embryo defective 2738, GTP-binding family protein (.1.2) AT5G39960 59 / 7e-09 GTP binding;GTP binding (.1) AT5G66470 51 / 1e-06 RNA binding;GTP binding (.1) AT1G30960 50 / 3e-06 GTP-binding family protein (.1) AT1G50920 47 / 4e-05 Nucleolar GTP-binding protein (.1) AT1G10300 45 / 0.0002 Nucleolar GTP-binding protein (.1) AT4G11160 44 / 0.0002 Translation initiation factor 2, small GTP-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006309 [exp] 951 / 0 AT1G78010 669 / 0.0 tRNA modification GTPase, putative (.1) Lus10027371 [exp] 69 / 4e-12 AT3G12080 874 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Lus10002557 [exp] 69 / 5e-12 AT3G12080 869 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Lus10014289 [exp] 61 / 9e-10 AT5G66470 587 / 0.0 RNA binding;GTP binding (.1) Lus10025995 [exp] 60 / 3e-09 AT5G66460 577 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10014634 [exp] 54 / 2e-07 AT5G39960 634 / 0.0 GTP binding;GTP binding (.1) Lus10023046 [exp] 47 / 3e-05 AT1G30960 499 / 5e-176 GTP-binding family protein (.1) Lus10002558 [exp] 47 / 3e-05 AT1G50920 1039 / 0.0 Nucleolar GTP-binding protein (.1) Lus10027370 [exp] 47 / 5e-05 AT1G50920 1034 / 0.0 Nucleolar GTP-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G092600 [exp] 704 / 0 AT1G78010 688 / 0.0 tRNA modification GTPase, putative (.1) Potri.009G054200 [exp] 69 / 3e-12 AT3G12080 813 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Potri.007G021900 [exp] 56 / 3e-08 AT5G66470 535 / 0.0 RNA binding;GTP binding (.1) Potri.004G230600 [exp] 55 / 1e-07 AT5G39960 787 / 0.0 GTP binding;GTP binding (.1) Potri.001G160800 [exp] 48 / 1e-05 AT1G30960 491 / 4e-173 GTP-binding family protein (.1) Potri.001G239600 [exp] 45 / 0.0001 AT1G07615 511 / 3e-178 GTP-binding protein Obg/CgtA (.1) Potri.001G258900 [exp] 44 / 0.0003 AT1G50920 999 / 0.0 Nucleolar GTP-binding protein (.1) Potri.009G054000 [exp] 44 / 0.0004 AT1G50920 1048 / 0.0 Nucleolar GTP-binding protein (.1) Potri.011G140100 [exp] 43 / 0.0007 AT1G17220 1160 / 0.0 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase CL0289 [flax] [poplar] FBD PF10396 [flax] [poplar] TrmE_N GTP-binding protein TrmE N-terminus
Representative CDS sequence Show only first row Show all	>Lus10029578 pacid=23151959 polypeptide=Lus10029578 locus=Lus10029578.g ID=Lus10029578.BGIv1.0 annot-version=v1.0 ATGGTTCTTCTGCTTCATCTTCCTCATCATACTTTTACACACATCATCTTCAGACACCCAAAGTTCTCACCTTTCTCCATCTCTTCTTGTTTCCCTCTTT TCCTTCGTCGTCGTCTCCAAACCCCTAGTCTCACAAAGCCGCCGCATGCCAATTTTACCGCCGCCGCCAATTTGCTTCTCAACGGCAATGACCAGCGGTT CCAAGGATCAGATGATGAAAAATGTGTACAAAAACATTCAAGTTCAACCTCTAGTAGTACTATTGCTGCTATTGTCACTTCCATTGGTGGCCCTCCTGGA GCTGTAGGCATCGTTCGCCTATCTGGACCATCTGCAGTCAACGTTACTGCTAGTGTTTTTAAACCCACCAAGAAGAAGAGGAATGATCGGTTATTGGGGG ATGCTGCTTGGCAACCTACTAGCCATGTTGTGGATTACGGTGTGGTTCTGGATCAGCAGGGGAACGTAATCGATGAGGTTCTTGTAGTGCCAATGTTGGC TCCAAGATCCTATACCCGTGAGGATGTGGTTGAGCTTCAGTGCCATGGGAGTGAAGTTTGTCTTAACCGAGTGTTGAGAGCCTGTCTGGAAGCTGGAGCT AGGCTTGCAGAGCCAGGTGAATTTACCCTCCGTGCATTTTTGAATGGTCGCTTGGACCTCTCCCAAGCTGAAAATGTTGGGACGTTAATTTCAGCCAAAT CTGTGGCGGCTGCAGATGCAGCACTTTCTGGAATACAGGGAGGCTTTGGTTTGCTGGTGAAATCATTAAGAATCCAATGCATTGAGTTGCTTACTGAGAT TGAAGCTCGTCTGGACTTTGACGATGAGATGCCACCAATAGATCTGAACCTGATTGAGGAGAAGATAGTAGCCATGTCACGGGATGTCGATAGTGCTTTG GAGACTGCCAATTATGATAGGCTTCTGCAGTCTGGATTGCAGGTAGCAATACTAGGCCGTCCAAATGTTGGGAAATCAAGCCTTCTTAATGCTTGGAGTA AGAGTGAGAAGGCAATTGTTACAGACATTGCTGGAACAACCAGGGATGTCATCGAAGCTAGCATTACAGTTGGTGGTATTCCCGTGACACTCCTCGATAC AGCCGGCATTAGAGAAACCAACAATATCGTTGAGAAGATTGGTGTAGAAAGATCTGAGGCTGTAGCCAAAGGGGCAGATATTATTATTTTGGTAATGAGT GCCTCTGATGGATGGACTCCAGAAGATGCAGCCCTTCTGCGGCTGATGGAGTCCAACAAGGAGAAAACTGGGTCATCATCTCCAATCATCCTGGTTATCA ACAAGATAGACTGTGCTCATCCATCTATATCAGCCGAATGGGACGGAACGCAAGCCTCCCATAATCGTGTTTTCACCTGTGCGGTTTCGGGTCAAGGAAT TCGAGAGCTAGAAGCAGCGATCAAAGAAATCGTCGGTCTGAACAAGATTCCAGCTGGAGGCCGGAAATGGACAGTGAATCAGAGACAGTGCGAGCAGCTT TTACGAACACGGGAAGCGCTGGGGAGGTTGCAGAAATCGATGGAAGAGGAAGTGCCACTGGACTTTTGGACGATCGATTTGAGAGATGCTGCATTGTCGC TTGGACAGATCACTGGAGAAGACATATCTGAAGAGGTTTTGTCCAACATTTTTGGCAAATTCTGTATCGGTAAGTAG
AA sequence Show only first row Show all	>Lus10029578 pacid=23151959 polypeptide=Lus10029578 locus=Lus10029578.g ID=Lus10029578.BGIv1.0 annot-version=v1.0 MVLLLHLPHHTFTHIIFRHPKFSPFSISSCFPLFLRRRLQTPSLTKPPHANFTAAANLLLNGNDQRFQGSDDEKCVQKHSSSTSSSTIAAIVTSIGGPPG AVGIVRLSGPSAVNVTASVFKPTKKKRNDRLLGDAAWQPTSHVVDYGVVLDQQGNVIDEVLVVPMLAPRSYTREDVVELQCHGSEVCLNRVLRACLEAGA RLAEPGEFTLRAFLNGRLDLSQAENVGTLISAKSVAAADAALSGIQGGFGLLVKSLRIQCIELLTEIEARLDFDDEMPPIDLNLIEEKIVAMSRDVDSAL ETANYDRLLQSGLQVAILGRPNVGKSSLLNAWSKSEKAIVTDIAGTTRDVIEASITVGGIPVTLLDTAGIRETNNIVEKIGVERSEAVAKGADIIILVMS ASDGWTPEDAALLRLMESNKEKTGSSSPIILVINKIDCAHPSISAEWDGTQASHNRVFTCAVSGQGIRELEAAIKEIVGLNKIPAGGRKWTVNQRQCEQL LRTREALGRLQKSMEEEVPLDFWTIDLRDAALSLGQITGEDISEEVLSNIFGKFCIGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78010			tRNA modification GTPase, puta...		Lus10029578 [exp]	0	1
AT5G41980			unknown protein		Lus10024452 [exp]	2.4	0.8405
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Lus10012931 [exp]	3.2	0.8667
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10000213 [exp]	3.5	0.8563
AT1G78910			Pseudouridine synthase family ...		Lus10034804 [exp]	4.0	0.8612
AT2G25870			haloacid dehalogenase-like hyd...		Lus10038133 [exp]	6.0	0.8486
AT5G40660			ATP12 protein-related (.1)		Lus10000142 [exp]	7.9	0.8331
AT1G78910			Pseudouridine synthase family ...		Lus10033350 [exp]	8.5	0.8302
AT2G48120		PAC	pale cress protein (PAC) (.1),...		Lus10000662 [exp]	9.8	0.8360
AT5G08010			unknown protein		Lus10040520 [exp]	11.0	0.8480
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10021766 [exp]	11.3	0.8130

Compare expression of checked genes

Lus10029578 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.