Plant FIBer expression Database

Lus10029579 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G145600
[exp]
676 / 0 ND /
Potri.018G138206
[exp]
674 / 0 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0061 PLP_aminotran PF01276 OKR_DC_1 Orn/Lys/Arg decarboxylase, major domain
CL0061 PF03711 OKR_DC_1_C Orn/Lys/Arg decarboxylase, C-terminal domain
Representative CDS sequence
>Lus10029579 pacid=23152116 polypeptide=Lus10029579 locus=Lus10029579.g ID=Lus10029579.BGIv1.0 annot-version=v1.0
ATGCAGATTCTTCTCTTCAAAGAAATCTGGCTTTCCATCATAACGTGCAAGCTTCCACTTGCAGCTAATGTGGGTAAGCAAGCCTTTACTGTGATTCCTC
AATTGGCTTTCAACAGCAGGCGAAGTTTCAAGCTTCAAATTGATAAAGCTAGCAACATCACCACAGTTTCTGCTTCCCAGGCAAGGAGTGATGTATCTCA
AGAAAAGATTCAGGATGGCAGAAACAATAAGCTGATTCCGATACAGTCTGGAAATGGATGTGCATCATCTACACCATTGGTGGATGCATTGAAAACCTCA
GCTGAGCAGAATGTGGCTAGGTTCCACTTTCCTGGCCACAACAGCGGCCGTGCTGCACCGAGTTCGCTGACTCGTTTGATCGGTCTGGAACCATTTGCTC
ATGATTTGCCTGAGCTTCCAGAGCTGGACAATCTTTTTGCACCAAGTGGCCCCATTTTAGAGGCACAAAAGAAAGCTTCCAAATTGTTTGGATCCTCTGA
GACATGGTTCCTTGTTGGAGGCACGACTTGTGGAATCATAGCATCGATCATGGCTACCTGTTCTCCTGGAAAATTTCTAATCCTCCCTCGGAATTCGCAT
ATGTCCGCTATATCTGCCATGGTATTGTCTGGAGCCATGCCGAAGTACATAGTTCCTGAGTATAATTCCATTTGGGACATCCCAGGGGAAGTCACTCCTA
TTCAGGTACTTGAAGGTTCTAGGTGGCCTTTGAAACCAGTTTGGGTGTATTTGGTTACTATATTTCAGGTGGAGAAGGCTATGGAAGAATTGGGAAAGAA
CGGCGAAATACCAGGAGCAGTTTTAATCACATCTCCTACTTACCATGGTATATGCAGTAAATTGAGAGAGATCACAAGGATCTGCCGTTCTTATGGGGTT
CCTCTCATTGTTGACGAAGCTCATGGAGCACATCTAGGATTCCACCCTGAAATGCCTAGTTCAGCTCTACAGCAAGGTGCAGACCTGGCAGTGCAATCTA
CCCACAAGGTGTTATGTTCCCTTACACAGTCATCAATGCTACATCTCTCTGGAAATATGGTGGATAGAGCCAGAGTTTGTCACAGCCTGCAAATGCTTGA
AAGCACGAGTCCCAGCTACTTGCTCTTGGCATCATTAGATGCTGCCACATCTCAAATCGGCGAAAATCCAGCAACCGTGTTTAACACCGCTTTGCATCTG
GCTTCTGAAGCAAAGAGGTCAATCAAAAAGATTCCGGGCATCACATTACTCGATTCATCAAGCTTTGACAACATTCACGCCATTGATCCTTTGCGCCTTA
CTGTTGGGTTCTGGGAGCTGGGTTTATCTGGTTACGAGGCAGACGAGTACTTGGATATGAATCACGGAATAGTCCCCGAGATTGTAGGCACACGTTCTAT
AACGTTGGCGTTCAATCTGGGAACTGGAACGGAGGATGTTCGGAGGTTGGTTCGGGGGTTACAGGGATTATCAGAGGCACATTCATCCCCTATGCTTACG
AAACAAGAGCCTGCAGCAGGATGTTGTTCCGTTTTTGGCGCAACGGATGTGAGCATGATGAGCCCAAGAGATGCATTTTTCAGGAACAAGCAACGAGTTG
GTATTGAGGAAAGCATTGGGAAGGTATGTGGTGAGCTGATATGTCCATATCCACCAGGGATCCCAGTAATGATCCCTGGTGAGACCATTACTGAGGATGC
TATAACTTGCCTGCTTGACCTGAAAAGAAAGGGAGCCGTCATCACTGGACCCTCGGATCCATCACTTTGCTCAATTGTTATATGCGTTTTATGA
AA sequence
>Lus10029579 pacid=23152116 polypeptide=Lus10029579 locus=Lus10029579.g ID=Lus10029579.BGIv1.0 annot-version=v1.0
MQILLFKEIWLSIITCKLPLAANVGKQAFTVIPQLAFNSRRSFKLQIDKASNITTVSASQARSDVSQEKIQDGRNNKLIPIQSGNGCASSTPLVDALKTS
AEQNVARFHFPGHNSGRAAPSSLTRLIGLEPFAHDLPELPELDNLFAPSGPILEAQKKASKLFGSSETWFLVGGTTCGIIASIMATCSPGKFLILPRNSH
MSAISAMVLSGAMPKYIVPEYNSIWDIPGEVTPIQVLEGSRWPLKPVWVYLVTIFQVEKAMEELGKNGEIPGAVLITSPTYHGICSKLREITRICRSYGV
PLIVDEAHGAHLGFHPEMPSSALQQGADLAVQSTHKVLCSLTQSSMLHLSGNMVDRARVCHSLQMLESTSPSYLLLASLDAATSQIGENPATVFNTALHL
ASEAKRSIKKIPGITLLDSSSFDNIHAIDPLRLTVGFWELGLSGYEADEYLDMNHGIVPEIVGTRSITLAFNLGTGTEDVRRLVRGLQGLSEAHSSPMLT
KQEPAAGCCSVFGATDVSMMSPRDAFFRNKQRVGIEESIGKVCGELICPYPPGIPVMIPGETITEDAITCLLDLKRKGAVITGPSDPSLCSIVICVL

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10029579
[exp]
0 1
AT5G04780 Pentatricopeptide repeat (PPR)... Lus10034715
[exp]
1.4 0.8703
AT4G21065 Tetratricopeptide repeat (TPR)... Lus10013319
[exp]
2.8 0.8441
AT4G02750 Tetratricopeptide repeat (TPR)... Lus10027365
[exp]
3.0 0.8505
AT1G05750 PDE247, CLB19 pigment defective 247, Tetratr... Lus10013341
[exp]
4.7 0.8594
AT1G31830 Amino acid permease family pro... Lus10003232
[exp]
4.7 0.8091
AT1G09190 Tetratricopeptide repeat (TPR)... Lus10029853
[exp]
4.9 0.8321
AT4G13650 Pentatricopeptide repeat (PPR)... Lus10040997
[exp]
5.7 0.8171
AT2G37320 Tetratricopeptide repeat (TPR)... Lus10009070
[exp]
8.9 0.8335
AT3G25970 Pentatricopeptide repeat (PPR)... Lus10030249
[exp]
9.9 0.8217
AT1G64810 APO1 ACCUMULATION OF PHOTOSYSTEM ON... Lus10038736
[exp]
10.6 0.7424

Lus10029579 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.