Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04110 501 / 1e-167 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT5G67360 499 / 6e-167 ARA12 Subtilase family protein (.1) AT3G14240 479 / 1e-158 Subtilase family protein (.1) AT2G05920 473 / 9e-157 Subtilase family protein (.1) AT3G14067 464 / 5e-153 Subtilase family protein (.1) AT4G34980 459 / 2e-151 SLP2 subtilisin-like serine protease 2 (.1) AT2G04160 447 / 1e-146 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT1G01900 447 / 2e-146 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT5G59810 433 / 6e-141 ATSBT5.4 Subtilase family protein (.1) AT5G51750 430 / 6e-140 ATSBT1.3 subtilase 1.3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006310 [exp] 1301 / 0 AT5G67360 542 / 0.0 Subtilase family protein (.1) Lus10006307 [exp] 1124 / 0 AT5G67360 532 / 2e-179 Subtilase family protein (.1) Lus10002242 [exp] 1077 / 0 AT5G67360 555 / 0.0 Subtilase family protein (.1) Lus10002244 [exp] 1039 / 0 AT5G67360 567 / 0.0 Subtilase family protein (.1) Lus10006306 [exp] 1036 / 0 AT5G67360 555 / 0.0 Subtilase family protein (.1) Lus10029575 [exp] 1028 / 0 AT5G67360 552 / 0.0 Subtilase family protein (.1) Lus10029570 [exp] 1026 / 0 AT5G67360 550 / 0.0 Subtilase family protein (.1) Lus10006303 [exp] 1021 / 0 AT5G67360 563 / 0.0 Subtilase family protein (.1) Lus10028893 [exp] 727 / 0 AT1G04110 580 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G113700 [exp] 793 / 0 AT1G04110 538 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.019G006570 [exp] 788 / 0 AT1G04110 568 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118500 [exp] 765 / 0 AT1G04110 557 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118700 [exp] 740 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118800 [exp] 721 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.014G074600 [exp] 516 / 3e-173 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.002G256300 [exp] 498 / 5e-166 AT1G04110 1020 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.005G145300 [exp] 484 / 5e-162 AT5G67360 932 / 0.0 Subtilase family protein (.1) Potri.006G141200 [exp] 486 / 1e-161 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.014G018900 [exp] 470 / 3e-155 AT5G67360 994 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10029580 pacid=23152102 polypeptide=Lus10029580 locus=Lus10029580.g ID=Lus10029580.BGIv1.0 annot-version=v1.0 ATGAAATCCTATCTACTGATTTCCTTCACTTTAACTTCCACATTCCTATGCTTCTTCTCAGCCAAAAGTGATGACTTGAACACTTACATTGTGTTTCTGG AGAAACCAGAAAGCCTAACTCACACGCAGTCAAGTGATGATTTACATGGCTGGCACAACACATTCCTTCCCGAAACTACCTTAGAAAACCAACAGCGCGT GATACATTCCTACCGCAATGTGATCACAGGCTTCGCTGCTAGGCTTACACCTCAAGAAGCCAAAGCAATGGAGCAGAAGCAAGGGTTTGTTTCAGCAAGA CTTGAGAGATCCTTATCTCTACACACAACTCACACTCCAAAATTCTTAGGCCTGCAACAAATCCTACAGCAGCAAAAAAACATAGGACTACTAAACCGTT GGTTCAGCCCTTCGAATCTTGGCAGAGGAGTGATCATAGGCATTATTGACAGTGGCATCAAGTATGACCACCCTTCGTTTCGTGACCAAGGTATGCCTCC ACCTCCTGCAAGATGGAAAGGCAAGTGTGAGATAAATGGTAAAACGACATGTAACAACAAGCTCATCGGTGCTAGAAGCTTTCCCTATCCGGGGAATCTT TCTGAAGAGTTTCTCCACGGAACTCATACTGCTGGAGAAGCTGCTGGAACTGCTGTGGAAGGTGCCAATGTGTTTCGACAAGCTAACGGAACTGCAATGG GGATCACCCCGTTTGCCCACTTGGCGGTGTACAAGGTTTGTGCAGGAAGTAAAGAATGTGTGGAGAGTTCGGTATTGGCAGCAATGGATGCTGCTATAGA GGACGGTGTCGACGTGCTTTCGTTGTCGCTTGGATTGCAGACAGATCATTTGTATGATGATGTTGTTGCATTGGGTGCATTCAGGGCCGTTCAGAATGGA ATCTTTGTGAGCTGCTCAGCTGGGAATAGTGGACCGGACAATTATTCTGTTGCAAATGGGGCACCTTGGGTTCTAACAGTTGGAGCAGGTACCGTTGATA GGGATATCAGGACAACGGTAACATTAGGAAACAATTTGCAGTTTCATGGCCAATCCAGTTTCCAGCCTAAGGAGTTTCTTCCACAGCTATTGCCGATTCT CGAAGCTGGCATGATGAGTAGCAATGCATCAGCAGCATTTTGTGCAGAAGGATCATTGAAGAACATTGATGTTAGAGACAAGATCGTTCTGTGCCAGGGG AGCCACCTCATCGAAGGCATCAATCAAGGAAAAGAAGTGAAAGAGAATGGTGGAGTAGCTATGATCTTGATCAATGATTTGGCCCAGGGTTACACTACTC AAGCTGAAGCCCATGTTCTTCCTGCATCAAACATAAATTACAAAGACGGATTAGCAATCAAGGCTTACTTGAACTCCACGTCATCTCCAACTGCAACAAT CTCATTCCATGGTACTTCGATCGGGAAGTTGAGTGCTCCGCAAGTAGCCTCGTTCTCGTCAAGGGGTCCCAGCAAACAAAGTCCCGGGATCCTGAAACCT GACATCATTGGTCCTGGAGTGAGCATTTTAGGTGCTTGGGGAAAGTCGGTTGACAATTCTACCAACTCGTTCAATATTGTGTCGGGAACTTCGATGTCTT GCCCGCATCTTAGCGGCGTTGCAGCTCTTGTTAAGGAAGCTCATGTGGATTGGTCACCAGCTGCCATAAAGTCAGCCATTTTGACCACTGCTTACACAAA GGACCTTAGCGGAAAACCGATCTCCAACGAGCAGAATTCTTCTGCTACTGTTTTTGACATGGGTGCTGGCCATGTGAATGCACCAAAGGCTTTGGATCCA GGCTTGATATATGATATCCAACTGGATGATTACGTTGCGTATATATGCAGTTTAGGTTATAATGAGACACAGATGAGATTGATCGTGCAGCGCAACGTGA ACTGCTCGAATGAATCTTCCACACCGGGGGCTCAACTGAACTACCCTACATTTTCCATCTCGCTTGGTTCTGGTCCACAAACCTATACCAGAACAGTAAC TAATGTTGGCTCGCGTAACTCGACTTACACCAGCAAGGTATTCGCACCGGATGGTGTTGATGTTAAAGTCGAGCCAAGTGAGTTCAAGGTCAATCAGCTG AAAGAGAAAGCAACGTATTCAGTAACATTCAGGAGAGTGGGAAATGTGACAAGAAATGTGAGCCAAGGTTCCTTGGTGTGGTCATCAACTGATGATATGT ACAATGTTGTTAGCACAGTTGCTGTTGTATTTGTTTGA
AA sequence Show only first row Show all	>Lus10029580 pacid=23152102 polypeptide=Lus10029580 locus=Lus10029580.g ID=Lus10029580.BGIv1.0 annot-version=v1.0 MKSYLLISFTLTSTFLCFFSAKSDDLNTYIVFLEKPESLTHTQSSDDLHGWHNTFLPETTLENQQRVIHSYRNVITGFAARLTPQEAKAMEQKQGFVSAR LERSLSLHTTHTPKFLGLQQILQQQKNIGLLNRWFSPSNLGRGVIIGIIDSGIKYDHPSFRDQGMPPPPARWKGKCEINGKTTCNNKLIGARSFPYPGNL SEEFLHGTHTAGEAAGTAVEGANVFRQANGTAMGITPFAHLAVYKVCAGSKECVESSVLAAMDAAIEDGVDVLSLSLGLQTDHLYDDVVALGAFRAVQNG IFVSCSAGNSGPDNYSVANGAPWVLTVGAGTVDRDIRTTVTLGNNLQFHGQSSFQPKEFLPQLLPILEAGMMSSNASAAFCAEGSLKNIDVRDKIVLCQG SHLIEGINQGKEVKENGGVAMILINDLAQGYTTQAEAHVLPASNINYKDGLAIKAYLNSTSSPTATISFHGTSIGKLSAPQVASFSSRGPSKQSPGILKP DIIGPGVSILGAWGKSVDNSTNSFNIVSGTSMSCPHLSGVAALVKEAHVDWSPAAIKSAILTTAYTKDLSGKPISNEQNSSATVFDMGAGHVNAPKALDP GLIYDIQLDDYVAYICSLGYNETQMRLIVQRNVNCSNESSTPGAQLNYPTFSISLGSGPQTYTRTVTNVGSRNSTYTSKVFAPDGVDVKVEPSEFKVNQL KEKATYSVTFRRVGNVTRNVSQGSLVWSSTDDMYNVVSTVAVVFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029580 [exp]	0	1
AT2G19590		ATACO1, ACO1	ACC oxidase 1 (.1)		Lus10032682 [exp]	4.7	0.7830
AT5G44730			Haloacid dehalogenase-like hyd...		Lus10001353 [exp]	5.7	0.8018
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Lus10003549 [exp]	6.7	0.7825
AT5G57500			Galactosyltransferase family p...		Lus10015527 [exp]	7.7	0.7489
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Lus10018621 [exp]	11.4	0.7736
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10042787 [exp]	16.3	0.7646
AT1G21910	AP2_ERF	DREB26	dehydration response element-b...		Lus10003740 [exp]	17.9	0.7399
AT3G10040	Trihelix		sequence-specific DNA binding ...		Lus10035582 [exp]	21.0	0.7610
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10021212 [exp]	26.2	0.7084
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10031656 [exp]	28.8	0.6936

Compare expression of checked genes

Lus10029580 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.