Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11670 848 / 0 Protein of unknown function (DUF810) (.1) AT5G06970 431 / 7e-132 Protein of unknown function (DUF810) (.1) AT2G20010 281 / 3e-80 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) AT2G25800 265 / 1e-73 Protein of unknown function (DUF810) (.1) AT2G33420 229 / 1e-61 Protein of unknown function (DUF810) (.1) AT1G04470 213 / 3e-56 Protein of unknown function (DUF810) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006312 [exp] 1499 / 0 AT4G11670 740 / 0.0 Protein of unknown function (DUF810) (.1) Lus10026160 [exp] 462 / 1e-143 AT5G06970 1507 / 0.0 Protein of unknown function (DUF810) (.1) Lus10008663 [exp] 434 / 5e-132 AT5G06970 1449 / 0.0 Protein of unknown function (DUF810) (.1) Lus10034947 [exp] 307 / 4e-88 AT2G20010 1236 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Lus10008431 [exp] 248 / 3e-71 AT2G25800 860 / 0.0 Protein of unknown function (DUF810) (.1) Lus10013391 [exp] 210 / 3e-58 AT2G25800 756 / 0.0 Protein of unknown function (DUF810) (.1) Lus10023742 [exp] 215 / 7e-57 AT2G33420 1426 / 0.0 Protein of unknown function (DUF810) (.1) Lus10011785 [exp] 202 / 3e-53 AT2G33420 1256 / 0.0 Protein of unknown function (DUF810) (.1) Lus10012969 [exp] 166 / 8e-44 AT2G25800 545 / 0.0 Protein of unknown function (DUF810) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G108400 [exp] 1212 / 0 AT4G11670 1097 / 0.0 Protein of unknown function (DUF810) (.1) Potri.001G030100 [exp] 464 / 2e-144 AT5G06970 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.006G238200 [exp] 297 / 1e-84 AT2G25800 1446 / 0.0 Protein of unknown function (DUF810) (.1) Potri.018G044200 [exp] 287 / 3e-81 AT2G25800 1442 / 0.0 Protein of unknown function (DUF810) (.1) Potri.018G085900 [exp] 258 / 3e-71 AT2G20010 1166 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Potri.010G068000 [exp] 234 / 4e-63 AT2G33420 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.008G170200 [exp] 222 / 2e-59 AT2G33420 1382 / 0.0 Protein of unknown function (DUF810) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05664 [flax] [poplar] UNC_13_homolog Unc-13 homolog
Representative CDS sequence Show only first row Show all	>Lus10029581 pacid=23152143 polypeptide=Lus10029581 locus=Lus10029581.g ID=Lus10029581.BGIv1.0 annot-version=v1.0 ATGGAGCCGGCGGTGCTGTTGCATCGCTACCGTCGCGATCGCCGGAAGCTGTTGGACTTCCTCCTATCTTCCGGACTGATCAAGGAGCTCCGCACTCCTC CTGGTTCCTCCGCCAGCTCCCTCTCCGACCTTGATTTAGACTCTCCCAGCGCCGATTACGTCCTCCACTGCCTCAAGTCAGGCGGTGTTATTGACGTTGC TGAAGCTACTAAGAAGCACACTGAGGAATCTGCTTATCCTGTCATGATGGACTCGAGAAGGGGAAACACCTATTTCCTTGTTGGTTATCCAGATTCAGCT GGATCTCCTCCTAGGCGAACACCTCCTCCAATTAATCTTAGACGGACTTCGGATGTTTCACGCTCATCACGTCGATTGAACACTTCACATTCAAATGCAA CAACTTCTGCGAATGGCCATGGTTCTCAGTATCAAGTGCCTGTACCTGATGCTCCTTTCAGTCCTTCAAGAGTTCTGGATATTCCTCAACTTGGATTACC TGATCCAAGAACAAGATTATCTGACGATGACTTTCGGGAAGCAGCACATGAGTTATTGCTTGCATCCATGTTTCTCTCGGGCTTCTTTTATGGTTCTTTG TCTTACTTTTCTATTCACAACCGTCACTGTCTGAATTCCTTATATTATGATCCTTTGCACACTAGGATTGAAAGACAGCCAGTTGAAGATAGGAAAAGAG AGAAGAGTTCCAAGTTTTTGTCTGGTCTGAAGAACAAGAGGGACAAGATGCAGACACAATCTGAATCTTTCTCAAGACTTGCATCTATCATGGACACTGC TCATTCTATCCGTAGCTGCACTTCTGTGCCTATTTCAGAAACCATGGACGCATGCGTGAGGCGAAATTTGCGGCAGTTGGCAATGAGAATGACTTCCAGA GACATTGATCTTCCTCATATGGCACTGGGACTTTTAAATGGGATATTCAAGTCCGATTTCACTCATGAAAAATCTTATAGGCAGTGGAAACAGAGGCAGG CAAATATATTAGAAGAGTTTCTGTGTTCTTCTACAGAGGCTGTAGGAGCTGCAGGTCCAACTATTAAAAACCATATTGCAAAGATTAAGGACACAGAGGA ATGGGATGCAATGTCTCCTTCTGAACGTGTTGCGGTTCTAGCATCTGTTAAACAAGTTGCTCTTAGAGTGTCTTCTTTGCCCGGTCGATTTGGTATCCAA GGCGAAACCTTTTATTGGACTGCTGATTATCACTTGAACCTCAGGATTTATCAGAATTTGCTCCTTGGTTTGTTTGATGTTCTCGAGGAAGGTCAGCTCA TAGAGGAAGCAGAGGAACTACTACCGTTTATAAATTCGACATGGACTACTTTAGGCATCACTCAAGGGATACATAATGCACTCTATGGAAACACCTTGCT GCTAGAGAATGTAGTTGTTGAATTGCGGAAAGTTCTATCTGCTGAAAAGGAAAATTGGTTGGAACAAGAGTACATAAACAGCCTAGCTTGTTCCAGGCAA CACGAGGGGAAGAGACTGAAGCTAAATCTGGTGCAGGATATAGTTCTCTCAATAAGCAATTCTTGTGACAGCAAACTTCAAGATTATCATCTGAATTTCT CTGAGCAACCATCTAGCTTCAGATTCATGGTAAACTTGTTGGCAATGGTGGGAGTTCCAGTTTTTAAAGGTAGTGGTGAACTTAAGTTCACGAAACTGAG TTCTTCAAACAAAAATGCTGCTAGGAAACTGAAATCTTATGTCAAGGGGTCAACTGAGGCTGCATGCAGACGGGTAGAAAGCAAGATATATCTTGAATCT AAAGGAGAGAAGAGACATCCTTTAGCTCTCCTGGCTGATGGACTAAAGTTGATTGCTGAGAAAGAATCCGAGGTCTTCTCTCCTGTTCTTCTTCATTATT GTCCTGATGCCTTGATCATCTCGGTTGTGTCATTGCACCAGTTTTTTGGAGAAAAATTGAAACCGTTCATAGCAGGAGTTTCATCTTTTTCAGAGGATGT CCAATATGTACTTTCTGCTGCTGATCAGTTAGATTATTACCTGATGCAGCTGTATAAATCAGCTTCAGAAGCAACTGCATCAAAGCATTACTTGATTCAG AATTTGGAACATTATCGGATTGCAGAAGTTTCAAAACCGTTGATTATCGATTGGGGGATATCTCAGCATGACCATATTTTGGAATGGACTGGACGTGCGT TTGATCTTGAGGACTGGGAGCCTTTGTCATTGAATAAGAGGCAAGCAGCATCAATCGTTGAAGTTTTTAGAATTATAGAGGAGGCTGTGGATCAATTCTT CGGGTTCAATCTCCCTCTTGATATCACTCATCTACAAGCCCTGCTGTCTATAATATTTCACAGCCTGGATTCCTATCTGCAAAAACTACTAAGTCAGTTA GTTCCGAAGACTCATCTGTATCCTCCCATTCCTCCGTTAACTCGTTATACAGAATCTGTTATACAAGTGACCAGGAAGAAGTTGTCAGAGTGTGTCCTTG CCGATGACAATTTGGGCTGCAACTTGGATGGATTGACAGTTCCAAAGCTTTGCGTGAGGTTAAACACTCTCCAATATATTTGCAAGCAAACAAGAACATT GGAAGATGGAATTAGAAAGTCTTGGGCAGACGTGAGACCATCTCAACGCCACCAAGAAGAAGAGCCCTTGGAAGAGAGTTGTTCAAACGAAGAACTGGAT GCATTATTTACTACTACTTTAAACATCATCTGTGACACTGCAACTGAGGGCATTAATAAAATTTCCGAATTTTCCGGTGCCAGGATTATCTTCTGGGACC TCAGACAGAAATTCTTGCTTGGTTTATACCATGGCGATGTTGGAAGTTCTCGCTTGGAAAGTTTCGTTCCTCAGATAGATAACGATCTCAACGAGATATG CCGTTTGATTGACGACACACTAAGAGACACGGTTGTGTCAAGCGTTTGCCGGGCATCGTTGGAAGGATTCGTCTGGGTGATGCTGAATGGAGGCCCTTCT CGTGCATTTTCTGATTCGGATGTTGTCATGATGGAAGAAGACTTCAACGTTTTGAAGGAATTTTTTATCGCCAGTGGAGAGGGTCTTCCGCGATCAGTGG TCGACCGAGAAGCAAAATATGCTGAACAGATACTTAACTTGTTCTCCCTTCAGACGGAGACGTTGATACGAATGTTGATGAACGCAAGTGAACACATCTC ACTAAGGCCAGATACACATCAACAACAACGAAACCACAAGCCTTCCGATGCCCAAACGCTGGTTCGTGTCTTGTGCCACAAGAAAGACAGGGAGGCGTCA AAGTTCTTAAAACGGCAATACGAACTTCCCATGTCATCAGAGTACGATGAAAGCGCATCGTCACAAGAGTCAACGACCAAGTCACCTCTCATAACAGATC TTCTTAATCGGAGCGCCTCGTTGAGAAGCGCTTCGATGCGGTGGGGGGAGAAGGGTGCGGCGCTCGGCTGGGGAGATAAGGGGTCTAGCAGTTTCAGAAA CTTGAAAAAACGGTTCCAAGAAGTAACGAGTGAGATCAGTTACATGAAACCCTGA
AA sequence Show only first row Show all	>Lus10029581 pacid=23152143 polypeptide=Lus10029581 locus=Lus10029581.g ID=Lus10029581.BGIv1.0 annot-version=v1.0 MEPAVLLHRYRRDRRKLLDFLLSSGLIKELRTPPGSSASSLSDLDLDSPSADYVLHCLKSGGVIDVAEATKKHTEESAYPVMMDSRRGNTYFLVGYPDSA GSPPRRTPPPINLRRTSDVSRSSRRLNTSHSNATTSANGHGSQYQVPVPDAPFSPSRVLDIPQLGLPDPRTRLSDDDFREAAHELLLASMFLSGFFYGSL SYFSIHNRHCLNSLYYDPLHTRIERQPVEDRKREKSSKFLSGLKNKRDKMQTQSESFSRLASIMDTAHSIRSCTSVPISETMDACVRRNLRQLAMRMTSR DIDLPHMALGLLNGIFKSDFTHEKSYRQWKQRQANILEEFLCSSTEAVGAAGPTIKNHIAKIKDTEEWDAMSPSERVAVLASVKQVALRVSSLPGRFGIQ GETFYWTADYHLNLRIYQNLLLGLFDVLEEGQLIEEAEELLPFINSTWTTLGITQGIHNALYGNTLLLENVVVELRKVLSAEKENWLEQEYINSLACSRQ HEGKRLKLNLVQDIVLSISNSCDSKLQDYHLNFSEQPSSFRFMVNLLAMVGVPVFKGSGELKFTKLSSSNKNAARKLKSYVKGSTEAACRRVESKIYLES KGEKRHPLALLADGLKLIAEKESEVFSPVLLHYCPDALIISVVSLHQFFGEKLKPFIAGVSSFSEDVQYVLSAADQLDYYLMQLYKSASEATASKHYLIQ NLEHYRIAEVSKPLIIDWGISQHDHILEWTGRAFDLEDWEPLSLNKRQAASIVEVFRIIEEAVDQFFGFNLPLDITHLQALLSIIFHSLDSYLQKLLSQL VPKTHLYPPIPPLTRYTESVIQVTRKKLSECVLADDNLGCNLDGLTVPKLCVRLNTLQYICKQTRTLEDGIRKSWADVRPSQRHQEEEPLEESCSNEELD ALFTTTLNIICDTATEGINKISEFSGARIIFWDLRQKFLLGLYHGDVGSSRLESFVPQIDNDLNEICRLIDDTLRDTVVSSVCRASLEGFVWVMLNGGPS RAFSDSDVVMMEEDFNVLKEFFIASGEGLPRSVVDREAKYAEQILNLFSLQTETLIRMLMNASEHISLRPDTHQQQRNHKPSDAQTLVRVLCHKKDREAS KFLKRQYELPMSSEYDESASSQESTTKSPLITDLLNRSASLRSASMRWGEKGAALGWGDKGSSSFRNLKKRFQEVTSEISYMKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11670			Protein of unknown function (D...		Lus10029581 [exp]	0	1
AT4G11670			Protein of unknown function (D...		Lus10006312 [exp]	1.4	0.9075
AT5G49530			SIN-like family protein (.1)		Lus10041724 [exp]	1.4	0.8943
AT2G28130			unknown protein		Lus10021421 [exp]	4.2	0.8477
AT3G04480			endoribonucleases (.1)		Lus10027962 [exp]	8.4	0.8364
AT5G27680		RECQSIM	RECQ helicase SIM (.1)		Lus10004503 [exp]	9.5	0.8558
AT5G54510		DFL1, GH3.6	DWARF IN LIGHT 1, Auxin-respon...		Lus10003598 [exp]	12.2	0.8234
AT4G23840			Leucine-rich repeat (LRR) fami...		Lus10001831 [exp]	17.6	0.7844
AT1G15720	MYB	TRFL5	TRF-like 5 (.1)		Lus10042209 [exp]	17.9	0.8271
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10029168 [exp]	18.0	0.8566
AT3G56120			S-adenosyl-L-methionine-depend...		Lus10033083 [exp]	18.1	0.8580

Compare expression of checked genes

Lus10029581 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.