Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63170 294 / 5e-98 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT3G61180 262 / 1e-85 RING/U-box superfamily protein (.1) AT4G11680 229 / 2e-72 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT1G12760 218 / 4e-69 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) AT1G68070 192 / 7e-59 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT2G01735 119 / 7e-31 RIE1 RING-finger protein for embryogenesis (.1) AT4G32600 109 / 1e-26 RING/U-box superfamily protein (.1) AT1G80400 107 / 5e-26 RING/U-box superfamily protein (.1) AT4G26580 73 / 2e-14 RING/U-box superfamily protein (.1.2) AT5G55970 69 / 5e-13 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006313 [exp] 333 / 2e-113 AT4G11680 456 / 8e-161 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10041359 [exp] 226 / 3e-71 AT3G61180 400 / 6e-139 RING/U-box superfamily protein (.1) Lus10036569 [exp] 214 / 6e-67 AT3G61180 387 / 1e-133 RING/U-box superfamily protein (.1) Lus10021801 [exp] 171 / 5e-50 AT1G68070 478 / 1e-169 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10034587 [exp] 130 / 6e-34 AT1G68070 489 / 6e-172 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10013144 [exp] 108 / 1e-26 AT4G32600 477 / 2e-167 RING/U-box superfamily protein (.1) Lus10011475 [exp] 105 / 1e-25 AT1G80400 459 / 9e-161 RING/U-box superfamily protein (.1) Lus10008106 [exp] 105 / 2e-25 AT4G32600 410 / 1e-141 RING/U-box superfamily protein (.1) Lus10023112 [exp] 90 / 6e-20 AT1G80400 447 / 1e-155 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G155200 [exp] 245 / 5e-79 AT3G61180 366 / 3e-125 RING/U-box superfamily protein (.1) Potri.003G123300 [exp] 241 / 4e-77 AT1G12760 400 / 7e-138 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) Potri.008G134900 [exp] 206 / 4e-64 AT1G68070 392 / 2e-136 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.014G075000 [exp] 173 / 3e-51 AT3G61180 315 / 1e-105 RING/U-box superfamily protein (.1) Potri.010G106300 [exp] 132 / 7e-36 AT1G68070 412 / 2e-144 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.006G247000 [exp] 109 / 9e-27 AT4G32600 498 / 1e-175 RING/U-box superfamily protein (.1) Potri.018G034400 [exp] 108 / 2e-26 AT4G32600 464 / 7e-162 RING/U-box superfamily protein (.1) Potri.011G094800 [exp] 74 / 7e-15 AT5G55970 412 / 1e-144 RING/U-box superfamily protein (.1.2) Potri.001G371200 [exp] 74 / 1e-14 AT5G55970 424 / 3e-149 RING/U-box superfamily protein (.1.2) Potri.008G087200 [exp] 64 / 7e-12 AT1G26800 194 / 6e-63 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10029582 pacid=23152126 polypeptide=Lus10029582 locus=Lus10029582.g ID=Lus10029582.BGIv1.0 annot-version=v1.0 ATGCCGCTGAGGCTGTGGATCGTTGGGTACGGGATGCAGTGTCTGTTGCATATGGGCTGCGTTGTTGTGGAGTATAGAAGGAGGAGGAGGAGGAGATTGG GGTTTGCGCCTGCGGGTGCTGGAAGGGGTGATGAGAATTCGAGTTCTGGGTCCAGAGGGGATTCTAGTGATTACGTGACGCTTTCTCAGTTACAGGATGA CGAAGGAACAAGCATCGCAAAGCATCTAGAGTCTGCCAATACGATGTTTTCATTTATCTGGTGGATCATTGGGTTCTACTGGGTCTCTGCTGGTGGACAA GATTTGTCACAAGACTCGCCTCAGCTTTATTGGCTTTGCATAGTCTTTCTTGGTTTTGATGTGTTCTTTGTGGTATTCTGTGTTGCTCTGGCTTGTGTCA TCGGCATTGCTGTGTGTTGCTGTCTTCCATGCATTATTGCGATATTGTATGCTGTTGCTGATCAGGAAGGAGCCACCAAAGAAGACATAGACCAGCTCGC AAAGTTCAAATTCCGAAGGGTTGTCGATAGCGAGAAGCTTGCAGGAGATGAGCAAGAGGCCCCCGGGGGCGTAATGACAGAATGTGGCACCGATTCACCA ATTGAGCATGCCCTGGCAGAGGAGGATGCGGAAGGAGCCACCAAAGAAGACATAGACCAGCTCGCAAAGTTCAAATTCCGAAGGGTTGTCGATAGCGAGA AGCTTGCAGGAGATGAGCAAGAGGCCCCCGGGGGCGTAATGACAGAATGTGGCACCGATTCACCAATTGAGCATGCCCTGGCAGAGGAGGATGCGGAATG CTGCATATGCCTTTCTGCTTACGACGATGGCGTCGAGATCCGTGAACTCCCCTGCGGCCATCACTTCCACTGCATTTGCGTAGACAAGTGGCTTCACCTC AATGCCACATGTCCTCTCTGCAAGTATAACATCCTCAAGAGCAGCCGGCAAGAGGAAGTATAA
AA sequence Show only first row Show all	>Lus10029582 pacid=23152126 polypeptide=Lus10029582 locus=Lus10029582.g ID=Lus10029582.BGIv1.0 annot-version=v1.0 MPLRLWIVGYGMQCLLHMGCVVVEYRRRRRRRLGFAPAGAGRGDENSSSGSRGDSSDYVTLSQLQDDEGTSIAKHLESANTMFSFIWWIIGFYWVSAGGQ DLSQDSPQLYWLCIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAILYAVADQEGATKEDIDQLAKFKFRRVVDSEKLAGDEQEAPGGVMTECGTDSP IEHALAEEDAEGATKEDIDQLAKFKFRRVVDSEKLAGDEQEAPGGVMTECGTDSPIEHALAEEDAECCICLSAYDDGVEIRELPCGHHFHCICVDKWLHL NATCPLCKYNILKSSRQEEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61180			RING/U-box superfamily protein...		Lus10029582 [exp]	0	1
AT1G16180			Serinc-domain containing serin...		Lus10026111 [exp]	1.4	0.9284
AT2G20740			Tetraspanin family protein (.1...		Lus10039817 [exp]	2.4	0.9046
AT4G11680			Zinc finger, C3HC4 type (RING ...		Lus10006313 [exp]	4.5	0.8869
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10019421 [exp]	4.9	0.9019
AT4G13630			Protein of unknown function, D...		Lus10011854 [exp]	4.9	0.8994
AT1G67600			Acid phosphatase/vanadium-depe...		Lus10011373 [exp]	5.2	0.8906
AT3G17000		UBC32	ubiquitin-conjugating enzyme 3...		Lus10016898 [exp]	5.9	0.8968
AT5G46170			F-box family protein (.1)		Lus10023298 [exp]	6.0	0.8608
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10018705 [exp]	6.0	0.8784
AT1G22040			Galactose oxidase/kelch repeat...		Lus10020960 [exp]	6.3	0.9009

Compare expression of checked genes

Lus10029582 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.