Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53020 182 / 2e-58 RPL24B, STV1 SHORT VALVE1, Ribosomal protein L24e family protein (.1) AT2G36620 182 / 3e-58 RPL24A ribosomal protein L24 (.1) AT2G44860 71 / 4e-15 Ribosomal protein L24e family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006314 [exp] 311 / 4e-108 AT2G36620 233 / 2e-78 ribosomal protein L24 (.1) Lus10024560 [exp] 201 / 7e-66 AT2G36620 238 / 2e-81 ribosomal protein L24 (.1) Lus10032198 [exp] 201 / 9e-66 AT2G36620 240 / 1e-82 ribosomal protein L24 (.1) Lus10008640 [exp] 191 / 7e-62 AT2G36620 243 / 1e-83 ribosomal protein L24 (.1) Lus10035584 [exp] 191 / 9e-62 AT2G36620 241 / 5e-83 ribosomal protein L24 (.1) Lus10014637 [exp] 92 / 1e-23 AT2G36620 100 / 6e-28 ribosomal protein L24 (.1) Lus10020552 [exp] 76 / 7e-17 AT2G44860 240 / 2e-82 Ribosomal protein L24e family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G085300 [exp] 190 / 2e-61 AT3G53020 199 / 2e-66 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.015G141900 [exp] 188 / 1e-60 AT3G53020 196 / 3e-65 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.012G139400 [exp] 186 / 4e-60 AT3G53020 227 / 3e-77 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.012G139500 [exp] 186 / 4e-60 AT3G53020 227 / 3e-77 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.003G123101 [exp] 176 / 6e-56 AT3G53020 218 / 8e-74 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.009G148500 [exp] 70 / 6e-15 AT2G44860 248 / 1e-85 Ribosomal protein L24e family protein (.1.2) Potri.004G187800 [exp] 70 / 8e-15 AT2G44860 249 / 8e-86 Ribosomal protein L24e family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [flax] [poplar] TRASH PF01246 [flax] [poplar] Ribosomal_L24e Ribosomal protein L24e
Representative CDS sequence Show only first row Show all	>Lus10029583 pacid=23152045 polypeptide=Lus10029583 locus=Lus10029583.g ID=Lus10029583.BGIv1.0 annot-version=v1.0 ATGAAATTATGCGTCGGCAATGGAATGGGTAAGTTGGCCCAAACTATCGGGCCGGAGAAAGCCCATTTCTTTCGCAACTCCTCTTCTAACTTCTTCAAGG TTTTCCAGGTAAGGTTAAATAAGAGAGGTAAGCGTCTGTCTAGGGTTTTACGAGGACAGAAGACCCAGAGCAGCAGCTGGAGGAGGATAGCTGCGGTGAC TGAAACCTACATCTTATCACCATGGACTGAGCTATGCCGTTTCAGCGGTCAAAAGATCTATCCCGGCAGGGGCATCAGATTTATCCGGTCTGATTCTCAG GTTTTCCTCTTTGCCAACTCCAAATGCAAGAGGTACTTCCACAACCGTCTGAAGCCTTCCAAGCTTACCTGGACCGCTGTGTTCAGGAAGCAGCACAAGA AGGATATTGCTGCTGAGGCTGTGAAGAAGAAGCGAAGGACCAACAAGAAGCCTTACTCGAGGTCTATTGTCGGTGCTTCCTTGGAGGTGATTCAGAAGAA GAGGGCTGAGAAGCCGGAAGTCCGTGATGCTGCTCGTGAAGCTGCCATTCGTGAGATCAAGGAGAGGATCAAGAAAACCAAGGACGAGAAGAAGGCGAAG AAGGCTGAAGTTTCAAAGTCACAAAAGGCACAAGGTAAGGGTGCTATGCCCAGGGGTGCTGCACCCAAGGGAGGACCCAAGCTTGGCGGTGGCGGTGGAA AGCGGTAA
AA sequence Show only first row Show all	>Lus10029583 pacid=23152045 polypeptide=Lus10029583 locus=Lus10029583.g ID=Lus10029583.BGIv1.0 annot-version=v1.0 MKLCVGNGMGKLAQTIGPEKAHFFRNSSSNFFKVFQVRLNKRGKRLSRVLRGQKTQSSSWRRIAAVTETYILSPWTELCRFSGQKIYPGRGIRFIRSDSQ VFLFANSKCKRYFHNRLKPSKLTWTAVFRKQHKKDIAAEAVKKKRRTNKKPYSRSIVGASLEVIQKKRAEKPEVRDAAREAAIREIKERIKKTKDEKKAK KAEVSKSQKAQGKGAMPRGAAPKGGPKLGGGGGKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10029583 [exp]	0	1
AT5G47680		AtTRM, TRM10	tRNA modification 10, unknown ...		Lus10038778 [exp]	1.7	0.9344
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10028965 [exp]	11.4	0.9234
AT1G34030			Ribosomal protein S13/S18 fami...		Lus10034179 [exp]	11.6	0.8997
AT5G15200			Ribosomal protein S4 (.1.2)		Lus10008624 [exp]	12.6	0.9235
AT1G08610			Pentatricopeptide repeat (PPR)...		Lus10042567 [exp]	13.4	0.8828
AT4G18100			Ribosomal protein L32e (.1)		Lus10011970 [exp]	13.6	0.9218
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Lus10019682 [exp]	14.4	0.8990
AT5G62290			nucleotide-sensitive chloride ...		Lus10038909 [exp]	16.1	0.8780
AT5G09510			Ribosomal protein S19 family p...		Lus10033856 [exp]	17.9	0.9205
AT2G44120			Ribosomal protein L30/L7 famil...		Lus10029423 [exp]	19.1	0.9136

Compare expression of checked genes

Lus10029583 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.