Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11720 799 / 0 HAP2, GCS1 GENERATIVE CELL-SPECIFIC 1, hapless 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006315 [exp] 914 / 0 AT4G11720 689 / 0.0 GENERATIVE CELL-SPECIFIC 1, hapless 2 (.1) Lus10006316 [exp] 147 / 2e-40 ND 48 / 1e-06
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G109000 [exp] 917 / 0 AT4G11720 936 / 0.0 GENERATIVE CELL-SPECIFIC 1, hapless 2 (.1) Potri.005G180400 [exp] 44 / 0.0001 AT1G21722 153 / 3e-46 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10699 [flax] [poplar] HAP2-GCS1 Male gamete fusion factor
Representative CDS sequence Show only first row Show all	>Lus10029584 pacid=23152119 polypeptide=Lus10029584 locus=Lus10029584.g ID=Lus10029584.BGIv1.0 annot-version=v1.0 ATGGAGCAATCGGCTGTCTCAATTGTGTCCTTCTGCTGCTTCCTTCTCTGCTTCTCGAGCTTCGCGTCGGCCGGAGTGGAGATTCTCTCCAAATCAAAAG TTGAGAGGTGCGAGAAGGGATCCGACGCCGGCGAACTCAACTGCACGAGAAAAGTCGTCCTCAACATGGCAGTTCCAAGTGGCACCAGTGGGAAAGATTC CTCGATCGTGGCGGAAATAGTGGAAGTGGAGGAGAACTCCACCGACTACATGCAAACGCTGCGAACGCCGCCTGTGATAACGATTAACAAATCTTCTGCG ATGTTGCTTACAAACCTGTTGAGTATTATGTTAAGACGCGCAAATGTGAGCCAGATGCTAATGAACACGTCGTGCAGATATGCGAAAGGCCAGTATTCTT ATCTTAGACTCAACTTGAAATTGCAAGATGAAAATGGTCGTGTTATTCAGCATTCGGAGCCAGTCTGCTGTCCTTGTGGGCCCCGTAGGCGAGTACCTTC ATCGTGCGGAAACTTCTTTGATAAATTGGTGAAAGGAAAGGCAAATACAGCACACTGCGTCAGATTTCCAGGTGATTGGTTTCATGTATTTGGGATTGGC CAGAGGTCAGTTGGATTTAGTGTCAAAATCGAAGTGAAGGTTGGATCTACAATCTCGGAAGTGATTTTGGGCCCTGAAAATAGAACAGCTACATCAAATG ACAACTTTCTAAGAGTTAATCTAATTGGAGACTTTGTTGGGTATTCTAGCATTCCTTCATTTGAAGACTTTTACCTTGTTCTTCCGAAGCAGGGGGATTC TGGACAGCAAGAAATGGGGAGGAATTTTTCCATGTGGATGCTACTTGAAAGAGTTAGATTTACCCTGGATGGAGTTGATTGCAATAAAGTTGGAGTTAGT TATGAGGCGTTCATTGGACAAGCAGATTTCTGTGCCTCACCATTCTGGAGCTGCTTACATAATCAGCTATGGAACTTCTGGAATGCTGATCAAAACCGAA TATCTAGAAAGCAGCCACCGCTGTATGTTGTTGAAGGAAGGTTTGAAAGGAATGCAGGCTCTCATTCGTTCTCCATCGGAATCACTGAGGTTCTAAATAC AAACCTGTTGATAGAACTAAGAGCAGATGACATCGAATATGTCTACCAAAGGAGCCCAGGGAAAATTATCGGGGTCACAGTTCCCACATTCGAGGCCCTA TCACAATTTGGAATTGCGACAATCACAGCTCAGAATATAGGGGAAGTGGAAGCATCCTACAGTTTAACGCTTCACTGCTCAAAAGGCGTTTCTCTTGTGG AGGAGCAATTCTTCATCATGAAACCAAATGACATCGCTACTCAATCATTCAAATTGTATCCTACAACTGATCAAGCTGCAAGTTATGTTTGCTCAGCTAT TTTGAAGGACTCCAATTTTAATGAAGTGGATCGAGCCGATTGTCAATTTTCTACAACAGCTACTACTATTGACAATGGGTCTCAGATTGGTCCTTTCATG CCACCCAATACAGGACATTATGGGTTCATGGAATTTTTTAGAACGCTGTGGAACAAACTGTGGGAAGCTCTGTCAGACTTCATCACTGGAAAAACTTGCA GAAGCAAATGCAGTGGCTTCTTTGATTTCAGATGCCACATACAGTATATATGCTTCAGCTGGATGGCGATGTTTGGTATACTTCTAGCTATTTTCCCAAC AGTGCTCGTATTAATTTGGCTTCTACACCAGAAGGGCTTTTTCGACCCCTTTTACGACTGGTGGGAAGATCACCTTGGCGATCAGAAGCATCGGAGACAT CACAGTAATGCTAACCATCACATCCATCACGGTACTAAAAAACACCACCACCACCATGGAACCAGGCACCACCACAAACACGGGACAACACATCATCGAC GAAGAACCGTCCATGCTCACAATAAGCACCCAGGAGCTGATGATGACTACTACTACTATCAGCTTCACCATGTCAACAAGGACCGCAAGAAGCAGCATCA TCGATCCAGGAAGACGAGCACTGTGCAGGAATCCCGTTTCGGAGAAATGGGAAATGACAGGGCCGAGCATCATGGACACAGGGACAAAAGAAACCGTAGA GGGGAGTAG
AA sequence Show only first row Show all	>Lus10029584 pacid=23152119 polypeptide=Lus10029584 locus=Lus10029584.g ID=Lus10029584.BGIv1.0 annot-version=v1.0 MEQSAVSIVSFCCFLLCFSSFASAGVEILSKSKVERCEKGSDAGELNCTRKVVLNMAVPSGTSGKDSSIVAEIVEVEENSTDYMQTLRTPPVITINKSSA MLLTNLLSIMLRRANVSQMLMNTSCRYAKGQYSYLRLNLKLQDENGRVIQHSEPVCCPCGPRRRVPSSCGNFFDKLVKGKANTAHCVRFPGDWFHVFGIG QRSVGFSVKIEVKVGSTISEVILGPENRTATSNDNFLRVNLIGDFVGYSSIPSFEDFYLVLPKQGDSGQQEMGRNFSMWMLLERVRFTLDGVDCNKVGVS YEAFIGQADFCASPFWSCLHNQLWNFWNADQNRISRKQPPLYVVEGRFERNAGSHSFSIGITEVLNTNLLIELRADDIEYVYQRSPGKIIGVTVPTFEAL SQFGIATITAQNIGEVEASYSLTLHCSKGVSLVEEQFFIMKPNDIATQSFKLYPTTDQAASYVCSAILKDSNFNEVDRADCQFSTTATTIDNGSQIGPFM PPNTGHYGFMEFFRTLWNKLWEALSDFITGKTCRSKCSGFFDFRCHIQYICFSWMAMFGILLAIFPTVLVLIWLLHQKGFFDPFYDWWEDHLGDQKHRRH HSNANHHIHHGTKKHHHHHGTRHHHKHGTTHHRRRTVHAHNKHPGADDDYYYYQLHHVNKDRKKQHHRSRKTSTVQESRFGEMGNDRAEHHGHRDKRNRR GE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11720		HAP2, GCS1	GENERATIVE CELL-SPECIFIC 1, ha...		Lus10029584 [exp]	0	1
AT5G22370		QQT1, EMB1705	QUATRE-QUART 1, EMBRYO DEFECTI...		Lus10007747 [exp]	9.5	0.8607
AT5G47540			Mo25 family protein (.1)		Lus10036523 [exp]	16.9	0.8862
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Lus10008208 [exp]	17.1	0.8846
AT3G59090			unknown protein		Lus10004930 [exp]	29.9	0.8557
AT3G08800		SIEL	SHORT-ROOT interacting embryon...		Lus10012221 [exp]	37.9	0.8070
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10040881 [exp]	38.1	0.8623
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Lus10039979 [exp]	39.6	0.8621
AT2G36270	bZIP	EEL, GIA1, ABI5	GROWTH-INSENSITIVITY TO ABA 1,...		Lus10021369 [exp]	49.6	0.8601
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Lus10002684 [exp]	52.0	0.8114
					Lus10019052 [exp]	54.7	0.8567

Compare expression of checked genes

Lus10029584 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.