Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18150 77 / 2e-15 RNI-like superfamily protein (.1) AT5G56440 67 / 4e-12 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G69630 66 / 2e-11 F-box/RNI-like superfamily protein (.1) AT5G38390 65 / 3e-11 F-box/RNI-like superfamily protein (.1) AT1G32375 62 / 2e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G66290 62 / 2e-10 F-box/RNI-like superfamily protein (.1) AT3G58940 61 / 7e-10 F-box/RNI-like superfamily protein (.1) AT5G18780 60 / 1e-09 F-box/RNI-like superfamily protein (.1.2) AT4G14103 59 / 2e-09 F-box/RNI-like superfamily protein (.1.2) AT5G56400 59 / 2e-09 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006318 [exp] 622 / 0 AT1G69630 74 / 9e-14 F-box/RNI-like superfamily protein (.1) Lus10029587 [exp] 350 / 5e-119 AT5G02930 74 / 3e-14 F-box/RNI-like superfamily protein (.1) Lus10029589 [exp] 350 / 6e-117 AT5G02930 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Lus10032432 [exp] 336 / 4e-113 AT1G69630 76 / 1e-14 F-box/RNI-like superfamily protein (.1) Lus10023042 [exp] 307 / 5e-103 AT1G69630 61 / 4e-10 F-box/RNI-like superfamily protein (.1) Lus10014141 [exp] 303 / 7e-101 AT3G18150 70 / 5e-13 RNI-like superfamily protein (.1) Lus10014142 [exp] 295 / 4e-96 AT3G18150 66 / 2e-11 RNI-like superfamily protein (.1) Lus10006319 [exp] 239 / 3e-77 AT1G69630 67 / 2e-12 F-box/RNI-like superfamily protein (.1) Lus10001507 [exp] 208 / 8e-64 AT5G56440 91 / 6e-20 F-box/RNI-like/FBD-like domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 137 / 7e-37 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.015G011200 [exp] 132 / 6e-35 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 128 / 1e-33 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G104200 [exp] 118 / 1e-29 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 112 / 1e-27 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 112 / 2e-27 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G024600 [exp] 72 / 1e-13 AT4G26350 95 / 9e-21 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G024200 [exp] 69 / 2e-12 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G024300 [exp] 67 / 6e-12 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.001G322900 [exp] 61 / 8e-10 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10029586 pacid=23152002 polypeptide=Lus10029586 locus=Lus10029586.g ID=Lus10029586.BGIv1.0 annot-version=v1.0 ATGGCAGCCGGAGAAGGAGTTGATAGGATAAGCAATCTCCCAGGCTCCATTCATCACCACATCCTCTCCTTTCTCGACACTAAATCCGCCGTTCAAACTT GTGTACTGTCCAAGCAGTGGGAATCTGCCTGGAAACATGTTCAGTCTCTCAATCTGCAGAACGTTTACTTCAACGAATACTCAAGGTACGAAAAATTTGT TGACAAAGTCTTGTTCCTTCGCCATCCCGTTCCTGTTAGCACTGTCTCTATCGGTCCTATTGGTTGCGAGTTTAGTCTGCTCAAAAGGGTTGTCCAGTAT GCTTTGTCCCATGGTGCTCAACATTTCAACATTCGACCCATTAATCGTATTGCACCCGATATCTCTCTTGTCAAGTTGTTTGATAACATCTGCGACACTG TAACAACTCTACAATTGGGATGGCTTCACCTCAATTTCCAATCTGATTGGTCTGCATTCCGGTCGCTAACAATGTTAAAGCTATATGGTACTCGGTTCTC TGTCTCGGAAGATGGGGAACTCTTTGAGCCCTTTTCTCAACTCCCCTGTCTCAGTGATTTGGTCTTGAATAGTTGCTTGTGGAAGAGGGTTAGTGAAGGT TTCATGGCTAACGACGAAACTGTGAGATTGAGGGTATCTGGACTCGAGCTGGTTAACTTGACGCTCTCAGATATTAATGTGTGCAAGTTAGAAATATTTG CACCCAAACTTGAATCTTTCGGGCTGTATTTGGACAAATACATGGAATTCTCAGAGCTAACTGTTCCTTCACTCGTTCATGCTGATATTCGAAGTAGTTA TTGGCGTTCTATGTACGAGCGTTATGATATTGACATAGAGTCTCTGGTTTCCATGTTCCATGGTTTGCATAACGTGGAATCTTTGTCGCTGCGTGGCGAT ATCTGCAATGTGGTCGATAGAACTTCCAAGTTTCTAGAGCAACACCCTTGTCCCTTTACGAAGCTGAAGAAGTTAAATATCGAGTTTCGCTCCAACTACA GTATACCTCACGAGGTCTTGGAGGATTATTTTCTTAATGGATCTTCTGATGCTTCCCTAAACATCCAGATTCTTGAGGAGGAAGATGAATATTGGGGAGA TAGATATTATTTGAATTCTTATGATATGGTATTGTTACTGGGCGTGGAGCTAATTAGTTTACAATAG
AA sequence Show only first row Show all	>Lus10029586 pacid=23152002 polypeptide=Lus10029586 locus=Lus10029586.g ID=Lus10029586.BGIv1.0 annot-version=v1.0 MAAGEGVDRISNLPGSIHHHILSFLDTKSAVQTCVLSKQWESAWKHVQSLNLQNVYFNEYSRYEKFVDKVLFLRHPVPVSTVSIGPIGCEFSLLKRVVQY ALSHGAQHFNIRPINRIAPDISLVKLFDNICDTVTTLQLGWLHLNFQSDWSAFRSLTMLKLYGTRFSVSEDGELFEPFSQLPCLSDLVLNSCLWKRVSEG FMANDETVRLRVSGLELVNLTLSDINVCKLEIFAPKLESFGLYLDKYMEFSELTVPSLVHADIRSSYWRSMYERYDIDIESLVSMFHGLHNVESLSLRGD ICNVVDRTSKFLEQHPCPFTKLKKLNIEFRSNYSIPHEVLEDYFLNGSSDASLNIQILEEEDEYWGDRYYLNSYDMVLLLGVELISLQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18150			RNI-like superfamily protein (...		Lus10029586 [exp]	0	1
					Lus10006897 [exp]	6.1	0.7481
					Lus10025503 [exp]	14.5	0.7421
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10028473 [exp]	14.7	0.7316
AT3G22640		PAP85	cupin family protein (.1)		Lus10022070 [exp]	20.4	0.7180
AT1G62935			unknown protein		Lus10009297 [exp]	22.4	0.7309
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10043203 [exp]	22.5	0.7013
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Lus10017825 [exp]	30.2	0.7026
AT4G35160			O-methyltransferase family pro...		Lus10008538 [exp]	34.0	0.7247
AT3G50845			Protein of unknown function (D...		Lus10014311 [exp]	35.4	0.7188
					Lus10019981 [exp]	36.2	0.7140

Compare expression of checked genes

Lus10029586 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.