Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03220 74 / 4e-14 Protein with RNI-like/FBD-like domains (.1) AT2G26030 70 / 8e-13 F-box/RNI-like/FBD-like domains-containing protein (.1.2.3) AT3G03040 69 / 2e-12 F-box/RNI-like superfamily protein (.1) AT5G02930 69 / 2e-12 F-box/RNI-like superfamily protein (.1) AT3G18150 67 / 4e-12 RNI-like superfamily protein (.1) AT3G03360 67 / 8e-12 F-box/RNI-like superfamily protein (.1) AT5G56440 67 / 8e-12 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G78840 66 / 2e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G16930 64 / 4e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G28410 64 / 5e-11 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006318 [exp] 575 / 0 AT1G69630 74 / 9e-14 F-box/RNI-like superfamily protein (.1) Lus10032432 [exp] 363 / 1e-123 AT1G69630 76 / 1e-14 F-box/RNI-like superfamily protein (.1) Lus10029589 [exp] 357 / 1e-119 AT5G02930 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Lus10029586 [exp] 350 / 6e-119 AT3G18150 78 / 2e-15 RNI-like superfamily protein (.1) Lus10014141 [exp] 324 / 3e-109 AT3G18150 70 / 5e-13 RNI-like superfamily protein (.1) Lus10023042 [exp] 317 / 4e-107 AT1G69630 61 / 4e-10 F-box/RNI-like superfamily protein (.1) Lus10014142 [exp] 297 / 5e-97 AT3G18150 66 / 2e-11 RNI-like superfamily protein (.1) Lus10032433 [exp] 261 / 2e-84 ND 50 / 6e-08 Lus10006319 [exp] 221 / 2e-70 AT1G69630 67 / 2e-12 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 144 / 2e-39 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.015G011200 [exp] 122 / 2e-31 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 114 / 1e-28 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G104200 [exp] 87 / 6e-19 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 87 / 1e-18 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 77 / 2e-15 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G024300 [exp] 73 / 6e-14 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G002001 [exp] 71 / 1e-13 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G024600 [exp] 71 / 4e-13 AT4G26350 95 / 9e-21 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G024200 [exp] 65 / 3e-11 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10029587 pacid=23152105 polypeptide=Lus10029587 locus=Lus10029587.g ID=Lus10029587.BGIv1.0 annot-version=v1.0 ATGAACAAGAAGAAGAAGAACAAGAGACGTGGCGGCAAACAGTTAGGGGTTGCCGGTGGAGTCGACAGAATAAGTAATCTCCCTGACTCCATTCTTCATC ACATCCTATCCTTCATCGACACCAAATCCGCCGTTCAAACTTCCGTATTGTCTAAGCAGTGGGAATCGGCCTGGAAACATGTTCATTCCCTCAATCTGGA GCTGAACTTCAATGAATATTCGAGGTATGAAAGGTTTGTGGATAATGTCTTGTCCCTCCGCCGTCCCCTTCATGTCAGCAAGGTTTTGCTATTGTGGAAC CTGGGTGCGTGCCCTGTCGCTCCTGATGATGAATTTAGCCTGCTCAGAAGGCTCTTTCTATATGCTGTGTCCCATGGTGCTCAAGATTTCAACGTTCGAC TGAGGGTTAATTTGTACATCCCTCTATTCGAATTGTTTAACTCGATCTCTGATACCGTAAGAAGTCTAGAATTGGTACGGTTTAACCTCGATTGTCAGCC TGCACGTTCTGCATTCGGGTTGCTGACTACTTTAAAGCTGTATGATTGTTGGTTCTCAACTGAAGACGTGCTGATCGAGCCATTTTCTCAATTTCCTTGT CTGAAAGATTTGTTCTTGGATAATTGCTTGTGGTTGGTAAGTGAAGATGATAACCAAATTAGGAGATTGAGGATTTCCGGAGTCGAGCTGGTTAACTTGA CAATTACTCGTATGAATGTGTGGAGCTTTGAACTATTTGCACCTAAACTCGAATCTTTGGTGTTCTGTTTTGTGGAATTTACGGAATTCTCAGAGCTAAC CCTCCCGTCCCTCGTTTGTGCTGATGTCGGATTCCGTTTTGAGCACCTTCTCGACGAGGATGATGATATTGTCGTGGAACATCTAGTCGTCATGTTCCGT GGTCTACATAACGTGGAATTTCTGATGCTAGGCAAGGAAATCAGCGAGGCTGTCCGTAAGATGTCAAAGTTTCTAGAGCAACAAGCTTGTCCTTTCACGA AACTGAAGAAGTTGAATCTGGAGTTTGAGTCCAGCGATGACATACCTTATAAGGTTTTGGATAGTTACTTCAATAACGTATCTTCTAATGCTGGCCTACA TATCGAGATTGGGGAGGAAGGATTGTGA
AA sequence Show only first row Show all	>Lus10029587 pacid=23152105 polypeptide=Lus10029587 locus=Lus10029587.g ID=Lus10029587.BGIv1.0 annot-version=v1.0 MNKKKKNKRRGGKQLGVAGGVDRISNLPDSILHHILSFIDTKSAVQTSVLSKQWESAWKHVHSLNLELNFNEYSRYERFVDNVLSLRRPLHVSKVLLLWN LGACPVAPDDEFSLLRRLFLYAVSHGAQDFNVRLRVNLYIPLFELFNSISDTVRSLELVRFNLDCQPARSAFGLLTTLKLYDCWFSTEDVLIEPFSQFPC LKDLFLDNCLWLVSEDDNQIRRLRISGVELVNLTITRMNVWSFELFAPKLESLVFCFVEFTEFSELTLPSLVCADVGFRFEHLLDEDDDIVVEHLVVMFR GLHNVEFLMLGKEISEAVRKMSKFLEQQACPFTKLKKLNLEFESSDDIPYKVLDSYFNNVSSNAGLHIEIGEEGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02930			F-box/RNI-like superfamily pro...		Lus10029587 [exp]	0	1
AT1G70280			NHL domain-containing protein ...		Lus10012989 [exp]	2.6	0.8055
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10002092 [exp]	6.3	0.7952
AT2G37320			Tetratricopeptide repeat (TPR)...		Lus10009070 [exp]	8.8	0.7970
AT5G59100			Subtilisin-like serine endopep...		Lus10042555 [exp]	8.8	0.7853
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10021069 [exp]	10.2	0.7969
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10043276 [exp]	15.2	0.7842
AT1G62730			Terpenoid synthases superfamil...		Lus10032248 [exp]	15.2	0.7817
					Lus10029579 [exp]	15.5	0.7859
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10003857 [exp]	15.6	0.7517
AT5G56740		HAG02, HAC7, HA...	histone acetyltransferase of t...		Lus10032700 [exp]	17.3	0.6940

Compare expression of checked genes

Lus10029587 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.