Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69630 53 / 3e-08 F-box/RNI-like superfamily protein (.1) AT1G66300 49 / 7e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G22720 47 / 3e-06 F-box/RNI-like superfamily protein (.1.2) AT1G78760 44 / 4e-05 F-box/RNI-like superfamily protein (.1) AT1G66320 41 / 0.0003 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006319 [exp] 281 / 1e-96 AT1G69630 67 / 2e-12 F-box/RNI-like superfamily protein (.1) Lus10023042 [exp] 214 / 2e-69 AT1G69630 61 / 4e-10 F-box/RNI-like superfamily protein (.1) Lus10032432 [exp] 210 / 1e-66 AT1G69630 76 / 1e-14 F-box/RNI-like superfamily protein (.1) Lus10014142 [exp] 199 / 1e-61 AT3G18150 66 / 2e-11 RNI-like superfamily protein (.1) Lus10029589 [exp] 191 / 4e-58 AT5G02930 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Lus10029587 [exp] 185 / 2e-57 AT5G02930 74 / 3e-14 F-box/RNI-like superfamily protein (.1) Lus10006318 [exp] 189 / 2e-56 AT1G69630 74 / 9e-14 F-box/RNI-like superfamily protein (.1) Lus10029586 [exp] 183 / 2e-56 AT3G18150 78 / 2e-15 RNI-like superfamily protein (.1) Lus10014141 [exp] 172 / 1e-52 AT3G18150 70 / 5e-13 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 46 / 5e-06 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.011G104200 [exp] 41 / 0.0003 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G024300 [exp] 40 / 0.001 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029588 pacid=23152027 polypeptide=Lus10029588 locus=Lus10029588.g ID=Lus10029588.BGIv1.0 annot-version=v1.0 ATGGGCCGGGTCGGGAAAGTTAGCCATTTAGGACTCGACACTCAATCCGCCGTTAAGACTTGTGCATTGTCCAAGCAGTGGGAATCAGCCTGGAAACATG TTCATACTCTGAATCTTGAGCTGAAATTCGAAGAATACTCGTGGTACGTAATGTTTGTCGACAAAGTCTTGTCCCTTCGCCATCCCCTTGCTGTCAGCAA GGTTTTATGGCACCCATATGACTACTCTTACGGTCCTATTGGTACCGAGTTTAGTCTGCTCAGAAGGGTCGTCCAATATGCAGTGTCTCATGGTGCTCAA CATTTCGACCTAGAACCCAGATGTGAATGTAAACCCAATATCCCTCTTTTCGGATTGTTTGACTCCCTTTCTGGCACCGTAACAAGTCTGAAATTATTAC GGTTTGACTTCTATTGTCAACCTGAATGTTCTGGATTCCGGTTGCTAACAACCTTAAAGCTGCAATGTTGTTGTCTCTCAGCCGACGGAGAGCTCGTTGA GCCCTTTTCTCAATTTCCCTGTCTTAAGGATTTGGTTTTGCTTGATTGCTGGTGGGTACGTAAAGGTGATGATTACAGACCTGTGAGATTGATGGTTTTC GGACTCTAG
AA sequence Show only first row Show all	>Lus10029588 pacid=23152027 polypeptide=Lus10029588 locus=Lus10029588.g ID=Lus10029588.BGIv1.0 annot-version=v1.0 MGRVGKVSHLGLDTQSAVKTCALSKQWESAWKHVHTLNLELKFEEYSWYVMFVDKVLSLRHPLAVSKVLWHPYDYSYGPIGTEFSLLRRVVQYAVSHGAQ HFDLEPRCECKPNIPLFGLFDSLSGTVTSLKLLRFDFYCQPECSGFRLLTTLKLQCCCLSADGELVEPFSQFPCLKDLVLLDCWWVRKGDDYRPVRLMVF GL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69630			F-box/RNI-like superfamily pro...		Lus10029588 [exp]	0	1
AT2G34930			disease resistance family prot...		Lus10016337 [exp]	4.0	0.7614
AT5G53080			Tetratricopeptide repeat (TPR)...		Lus10005905 [exp]	5.3	0.7837
AT3G57360			unknown protein		Lus10032322 [exp]	5.5	0.7290
AT2G38570			unknown protein		Lus10022733 [exp]	7.5	0.7916
					Lus10020450 [exp]	10.6	0.7135
AT4G38280			unknown protein		Lus10022622 [exp]	14.3	0.7100
AT1G25260			Ribosomal protein L10 family p...		Lus10001072 [exp]	15.3	0.7802
AT1G69630			F-box/RNI-like superfamily pro...		Lus10006319 [exp]	15.7	0.7565
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10032659 [exp]	20.6	0.7442
AT4G30830			Protein of unknown function, D...		Lus10035817 [exp]	26.7	0.6508

Compare expression of checked genes

Lus10029588 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.