Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02930 72 / 4e-13 F-box/RNI-like superfamily protein (.1) AT1G66300 65 / 6e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G18150 64 / 9e-11 RNI-like superfamily protein (.1) AT5G02920 62 / 2e-10 F-box/RNI-like superfamily protein (.1) AT5G03100 62 / 3e-10 F-box/RNI-like superfamily protein (.1) AT3G62440 61 / 1e-09 SAF1 secondary wall thickening-associated F-box 1, F-box/RNI-like superfamily protein (.1) AT3G03360 59 / 4e-09 F-box/RNI-like superfamily protein (.1) AT1G66310 59 / 5e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G66290 57 / 1e-08 F-box/RNI-like superfamily protein (.1) AT5G02910 57 / 2e-08 F-box/RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029587 [exp] 357 / 1e-119 AT5G02930 74 / 3e-14 F-box/RNI-like superfamily protein (.1) Lus10029586 [exp] 350 / 9e-117 AT3G18150 78 / 2e-15 RNI-like superfamily protein (.1) Lus10032432 [exp] 338 / 1e-111 AT1G69630 76 / 1e-14 F-box/RNI-like superfamily protein (.1) Lus10006318 [exp] 334 / 8e-107 AT1G69630 74 / 9e-14 F-box/RNI-like superfamily protein (.1) Lus10014141 [exp] 315 / 2e-103 AT3G18150 70 / 5e-13 RNI-like superfamily protein (.1) Lus10023042 [exp] 305 / 5e-100 AT1G69630 61 / 4e-10 F-box/RNI-like superfamily protein (.1) Lus10014142 [exp] 292 / 4e-93 AT3G18150 66 / 2e-11 RNI-like superfamily protein (.1) Lus10006319 [exp] 266 / 9e-86 AT1G69630 67 / 2e-12 F-box/RNI-like superfamily protein (.1) Lus10001507 [exp] 222 / 3e-67 AT5G56440 91 / 6e-20 F-box/RNI-like/FBD-like domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 129 / 4e-33 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 113 / 2e-27 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G011200 [exp] 104 / 2e-24 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.011G104300 [exp] 82 / 1e-16 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 81 / 4e-16 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104200 [exp] 79 / 2e-15 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.015G002001 [exp] 66 / 1e-11 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.001G322900 [exp] 63 / 4e-10 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G024200 [exp] 59 / 3e-09 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G024300 [exp] 57 / 2e-08 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10029589 pacid=23151970 polypeptide=Lus10029589 locus=Lus10029589.g ID=Lus10029589.BGIv1.0 annot-version=v1.0 ATGGAGTTTCCAGCAGAGCTAACTCTTCCGTCTCTTGTTCATGCTGATATTAAAAGCCAACACTGGAACTCTTGCTTCGAGGAATATGATGTAGTCAAAG AAACTCTAGTATCCATGTTCCGTGATTTACATAACGTGGAATCTTTGACGCTATGTGACGATATGAGCAAGGGAAGTACATGTGCACGCCTTAGAAGTTC CAAGTTTCTAGAGCAACAACCTTATCCTTTTAAACAACTGAAGAAGTCAATTTTGGAGGCCGTGTCCTCCGTAGACGAGATACCTTACAAGGTCTTTGAT AATTACTTCTTTAACGGATCTTCTGATGCTGGTCTAAACACTCGGAAGAAAAGATTGTGGCGGCAAGTAACGATTGAGCGTTTGGCTTCATCGATCGAGC GAGGACGGGGAAACGATGTTCATCATCGTGCTTGTGACATTGCAAAACGGGATTTGAGAGCTGTGAACAAGAAACAGAGGAGCATTAACAGCAGCGATCT AGGGATGGAAGCCGGAGGAGGAGTTGACAGACTAAGCAATCTGCCAGAATCAATTATTCACCACATCCTATCATTCCTCGACACAGAATCCGCAGTTAAA ACTTGTGTATTGTCCAAGCAGTGGGAATCCACCTGGAAAAATGTTCATACTCTGAATCTGAATCTGAGCTTCATAGAATACTCGAGGTGCGAAAGGTTAG TCGCCAATGTCTTGTCCCTCCGCTATCCCCTTCATGTCAGCAAGGTTTTATGGCTCACAAATATGCGGTGTGCCGGTCGTGATGAGTCTGAGTTTAGTCT GCTCAGAAAGGTTGTCCAATATGCGGTGTCCCATGGTGCTCAACATTTCGACCTACGACCCTATTCAGATAATCCCCATATCCCTCTTTTCGAATTGTTT GATGACTCCATCTCTGACTCTGTAACAAGTCTGGAATTATCATGGTTTTGCATCTATTGTGAACCTGAATGGTCTCGTCAGTTCCGGTTGCTAACAACCT TAAAGCTGCAACGTTGCATTCTCCCAGCGCAGGATGGGGAGCTCGTTAAGCCTTTTTCGCAATTCCCATGTCTCAAAGATTTGTTCTTGGATATTATCGA GTTTGTAAGTGATGACCGCCTACCTGTTAGATTGAGGGTTTCTGGACTCGAGCTGGTTAACTTGACATTCTCAAATGTTAATGTGTGCAAGTTAGAGATA TTTGCACCCAAACTCAAATCTCTGAGATTGGTAGACGTTGGGGAGTTCTTAGAGCTAACGCTTCCCTCCCTTGTTCATGCTGATATTCGAGAATGTTGTT TGAACTTTACCAGAGGGAATGTTTATGTTCATAAAAAATCTGTGATCATCATGTTTCATGGTCTACATAACGTAGAATCTCTGACGCTGTGTCACGATAT GAGCAAGGAAATCCTTGGAATTTCCAAATTTCTAGAGCAACAACCTTGTCCTTTTAAAAGATTGAAGAAGTTAAATTTGGAGCTGGCGTCCTTAGACGAG ATACCTTACGAAGTCTTGGATAATTACTTCTTTGACGGATCTTCTGATGCTGGTCTAATCATCCAGACACTGAAACAAGGATTCTTCTGGCAAGTAATGG TTGAGCGTTTGCCCTGA
AA sequence Show only first row Show all	>Lus10029589 pacid=23151970 polypeptide=Lus10029589 locus=Lus10029589.g ID=Lus10029589.BGIv1.0 annot-version=v1.0 MEFPAELTLPSLVHADIKSQHWNSCFEEYDVVKETLVSMFRDLHNVESLTLCDDMSKGSTCARLRSSKFLEQQPYPFKQLKKSILEAVSSVDEIPYKVFD NYFFNGSSDAGLNTRKKRLWRQVTIERLASSIERGRGNDVHHRACDIAKRDLRAVNKKQRSINSSDLGMEAGGGVDRLSNLPESIIHHILSFLDTESAVK TCVLSKQWESTWKNVHTLNLNLSFIEYSRCERLVANVLSLRYPLHVSKVLWLTNMRCAGRDESEFSLLRKVVQYAVSHGAQHFDLRPYSDNPHIPLFELF DDSISDSVTSLELSWFCIYCEPEWSRQFRLLTTLKLQRCILPAQDGELVKPFSQFPCLKDLFLDIIEFVSDDRLPVRLRVSGLELVNLTFSNVNVCKLEI FAPKLKSLRLVDVGEFLELTLPSLVHADIRECCLNFTRGNVYVHKKSVIIMFHGLHNVESLTLCHDMSKEILGISKFLEQQPCPFKRLKKLNLELASLDE IPYEVLDNYFFDGSSDAGLIIQTLKQGFFWQVMVERLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02930			F-box/RNI-like superfamily pro...		Lus10029589 [exp]	0	1
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Lus10010676 [exp]	4.9	0.8236
AT5G12320			ankyrin repeat family protein ...		Lus10009696 [exp]	6.1	0.8589
AT1G10865			unknown protein		Lus10032774 [exp]	6.6	0.7964
AT4G30900			DNAse I-like superfamily prote...		Lus10022154 [exp]	10.5	0.8309
AT5G49540			Rab5-interacting family protei...		Lus10029365 [exp]	11.0	0.8395
AT1G09150			pseudouridine synthase and arc...		Lus10015197 [exp]	11.6	0.8471
AT3G53500		RSZ32, RS2Z32, ...	arginine/serine-rich zinc knuc...		Lus10009067 [exp]	12.6	0.8456
AT3G05870		APC11	anaphase-promoting complex/cyc...		Lus10015126 [exp]	13.1	0.8328
					Lus10031226 [exp]	18.6	0.8119
AT2G45320			unknown protein		Lus10030280 [exp]	18.7	0.8062

Compare expression of checked genes

Lus10029589 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.