Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63110 488 / 2e-170 GPI transamidase subunit PIG-U (.1.2.3) AT1G12730 448 / 1e-154 GPI transamidase subunit PIG-U (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006320 [exp] 647 / 0 AT1G63110 624 / 0.0 GPI transamidase subunit PIG-U (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G109200 [exp] 514 / 1e-180 AT1G63110 550 / 0.0 GPI transamidase subunit PIG-U (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0111 [flax] [poplar] GT-C PF06728 [flax] [poplar] PIG-U GPI transamidase subunit PIG-U
Representative CDS sequence Show only first row Show all	>Lus10029590 pacid=23152106 polypeptide=Lus10029590 locus=Lus10029590.g ID=Lus10029590.BGIv1.0 annot-version=v1.0 ATGGCGACGGCTAATACAGAAGAGGAAAGCAAAATGAAACCCCACGAAGCGGGAGGTGGTGGAGGAGTAGAAGGAGGAGGAGGAGGAGGTTTCTGGAAAT GGGCAGTGTTCGCCGTGATCTTCCGACTGATCCTCATTTACTTCCCAGGAAATCTCAACTTGTCTTCTCGCCCGGAAGTCTCCACTCCTCTCACCTCCCT TCGCCGCCTGGCAGAGGGGTACTGGTTGAAGCAATCGTCGATGTCTCCTTATGCAGGATCCATGTACCATGGTTCTCCATTGTTGCTCTCTCTTCTCGGG CCTCTTACTGTCAAAAGGTGCAATTATCCTGATGAACTCGGTTTCCATTACAGAATCGAAGGCCAGCCCAGTCACATTCTGTGCAGTTTGGTTTTTGTCC TTGCAGACTTAATCAGTGCTATTCTCATCCGTGCTACTGGTCAGAAACTACAGATGTCATATAGGAAACACTTGTCGTCACTTAATCTGCTTACTAAATC CACAGATTCAGGCACACATTCTTCTGGAGATATAGCTGCTCTGGTGTACTTATGGAGTCCTTTCACAATTGTTGCCTGCGTGGGCTCATCGACATCTCCT ATAGAAAATCTTTTTACCATACTGACTCTTTTTGGAGCCGCTGCAGGGCTAGCACCTCTAGCAGCTTTCGGTTGGGTCATCGCAACTCATTTGTCCTTGT ATCCTGTGGTTCTAATCATACCGGTGATTCTCTTGCTGGGATATGGTCCAGATGCTCCTCCTAGTAAGTTGTTCCGATGTAAGGAATATGGTAAAGCTGG AAACTATCAATCAGAGGAAGAAATCATCTTTTCTTGGAGAAGAGTGTTGCATTTGTTAGTCTGGACTTCACTTTGGTCAGCATATGTGTTGTTCCTATGC AGTATATCTGTCAAGCAATACGGCAGTCTGCAGGAAATGTTTCAAAGAACTTATGGATTCATACTTACTGTGGAAGATCTGTCCCCAAATATCGGTGTTT TGTGGTACTTCTTTGCAGAAGTTTTCGACTTCTTCCGAGATTTCTTCCTGATCGTTTTCCATTCAAATATTTTGTTCATGATAATCCCATTGGCAATACG GCTAAAGCACCGACCTTGCTTCCTTGCTTTCATCTACATTGCCATTTCTTCAATGCTTAAGTCATATCCTTCAGTTGGAGATTCGGCTCTGTATTTAGGC CTCTTGGGATTGTTTCTGGATGAATTAGCTGATATGCAGTTTTCTTTCTTCCTCTTCTGCGGATACGTTGGAGTGTCCTTACTTAGCCCAGTGATGCATA ATCTTTGGATTTGGAGGGGCACTGGCAATGCAAACTTCTACTATGCAACGGCAATGGCCTACGCTTGCTTTCAGATTGTTTTGGTGGTTGAGAGTGTAAG CTCCATGCTCAACCACGACAGGAAGCTGACGAAGCTCTCTACCTCAAAGCTTGAAAAGCAAAGCTGA
AA sequence Show only first row Show all	>Lus10029590 pacid=23152106 polypeptide=Lus10029590 locus=Lus10029590.g ID=Lus10029590.BGIv1.0 annot-version=v1.0 MATANTEEESKMKPHEAGGGGGVEGGGGGGFWKWAVFAVIFRLILIYFPGNLNLSSRPEVSTPLTSLRRLAEGYWLKQSSMSPYAGSMYHGSPLLLSLLG PLTVKRCNYPDELGFHYRIEGQPSHILCSLVFVLADLISAILIRATGQKLQMSYRKHLSSLNLLTKSTDSGTHSSGDIAALVYLWSPFTIVACVGSSTSP IENLFTILTLFGAAAGLAPLAAFGWVIATHLSLYPVVLIIPVILLLGYGPDAPPSKLFRCKEYGKAGNYQSEEEIIFSWRRVLHLLVWTSLWSAYVLFLC SISVKQYGSLQEMFQRTYGFILTVEDLSPNIGVLWYFFAEVFDFFRDFFLIVFHSNILFMIIPLAIRLKHRPCFLAFIYIAISSMLKSYPSVGDSALYLG LLGLFLDELADMQFSFFLFCGYVGVSLLSPVMHNLWIWRGTGNANFYYATAMAYACFQIVLVVESVSSMLNHDRKLTKLSTSKLEKQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63110			GPI transamidase subunit PIG-U...		Lus10029590 [exp]	0	1
AT1G02145		EBS4, ALG12	EMS-MUTAGENIZED BRI1\(BRASSINO...		Lus10019399 [exp]	3.6	0.8387
AT3G55850		LAF3 ISF2, LAF3...	LAF3 ISOFORM 2, LONG AFTER FAR...		Lus10002745 [exp]	6.9	0.8125
AT5G01510		RUS5	ROOT UV-B SENSITIVE 5, Protein...		Lus10027788 [exp]	7.2	0.8372
AT3G56160			Sodium Bile acid symporter fam...		Lus10043443 [exp]	10.2	0.8132
AT3G15180			ARM repeat superfamily protein...		Lus10038999 [exp]	12.0	0.7893
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10026190 [exp]	13.0	0.7970
AT5G46560			unknown protein		Lus10011046 [exp]	14.1	0.8057
AT5G14030			translocon-associated protein ...		Lus10041525 [exp]	14.7	0.7246
AT5G39940			FAD/NAD(P)-binding oxidoreduct...		Lus10001121 [exp]	15.5	0.8001
					Lus10023643 [exp]	19.4	0.7783

Compare expression of checked genes

Lus10029590 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.