Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11740 395 / 2e-131 SAY1 Ubiquitin-like superfamily protein (.1) AT4G23040 358 / 1e-117 Ubiquitin-like superfamily protein (.1) AT4G00752 138 / 2e-35 UBX domain-containing protein (.1) AT4G10790 55 / 1e-07 UBX domain-containing protein (.1) AT2G43210 47 / 2e-05 Ubiquitin-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006321 [exp] 856 / 0 AT4G11740 433 / 7e-146 Ubiquitin-like superfamily protein (.1) Lus10041365 [exp] 210 / 2e-61 AT4G11740 241 / 4e-74 Ubiquitin-like superfamily protein (.1) Lus10036564 [exp] 199 / 2e-57 AT4G00752 250 / 8e-78 UBX domain-containing protein (.1) Lus10027684 [exp] 60 / 2e-09 AT4G10790 219 / 3e-67 UBX domain-containing protein (.1) Lus10017317 [exp] 50 / 3e-06 AT4G10790 382 / 4e-130 UBX domain-containing protein (.1) Lus10026718 [exp] 50 / 5e-06 AT2G43210 341 / 8e-112 Ubiquitin-like superfamily protein (.1.2) Lus10026717 [exp] 50 / 5e-06 AT2G43210 338 / 8e-111 Ubiquitin-like superfamily protein (.1.2) Lus10003214 [exp] 48 / 2e-05 AT4G10790 525 / 0.0 UBX domain-containing protein (.1) Lus10025504 [exp] 48 / 2e-05 AT2G43210 355 / 1e-117 Ubiquitin-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G122300 [exp] 551 / 0 AT4G11740 409 / 1e-136 Ubiquitin-like superfamily protein (.1) Potri.001G109500 [exp] 517 / 8e-179 AT4G11740 429 / 2e-144 Ubiquitin-like superfamily protein (.1) Potri.014G075600 [exp] 179 / 4e-50 AT4G00752 273 / 8e-87 UBX domain-containing protein (.1) Potri.015G080200 [exp] 67 / 2e-11 AT4G10790 229 / 1e-70 UBX domain-containing protein (.1) Potri.003G145200 [exp] 56 / 5e-08 AT4G10790 552 / 0.0 UBX domain-containing protein (.1) Potri.001G085600 [exp] 53 / 4e-07 AT4G10790 520 / 0.0 UBX domain-containing protein (.1) Potri.007G123800 [exp] 53 / 4e-07 AT2G43210 330 / 6e-108 Ubiquitin-like superfamily protein (.1.2) Potri.017G036600 [exp] 53 / 4e-07 AT2G43210 369 / 5e-122 Ubiquitin-like superfamily protein (.1.2) Potri.008G142800 [exp] 47 / 2e-05 AT1G14570 541 / 0.0 UBX domain-containing protein (.1.2.3.4) Potri.010G098800 [exp] 42 / 0.0008 AT1G14570 554 / 0.0 UBX domain-containing protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00789 [flax] [poplar] UBX UBX domain
Representative CDS sequence Show only first row Show all	>Lus10029591 pacid=23152138 polypeptide=Lus10029591 locus=Lus10029591.g ID=Lus10029591.BGIv1.0 annot-version=v1.0 ATGGCGACTCCCGAACAGGAAGCAATCAACACATTCATCAGCATCACCGGCGCCACCGAATCCGTCGCCGTCCAGAGACTCCGGGAACATAGGGGTGATC TCAATGCCGCTGTCAATGCACATTTCACTGAAGGAGACAGAAGCAGCTTGAACCCTCCATCTGTTCCTCCTCATGAAGATGACATCATGGATATAGATGA TCCAATCGAAACTGCGCCCCCGAGAAATCCCTTGTCTCTTCTGGCTGATCCAGCTGTTGTAAACCCATTTTCACTTCTCGATCCGCAATTCCGTAGAAGC TTCTTCGAGGGCGGTTCGGATTTTATGAACCGCGGACCATTTGTTACTCCACCAAGACAGGTGAGAGAGATACCCATAGAGATCAAGGACACCCCTAATG CTTCTGGCCGTTCTGGTCATGGTCCTGTTATCGAGGATGTTACTGGAACTGACTATGCTCATGAATCTGGCATCCGTGGGACTGTAATTGTTAGCGACGA TGAAGAAGATAATGGCGATGTCATTCTTCCCAGCCTTAATACAACTGCTGCTCGACAAGATGACCAAGATATAGATGGTTTAGGTGGCGCTTCTAATGAT ATGCCAAGGCCTAGTGCACCATTACCTGATAGCTCACTGGAATATGGCAATGACATAGAAGAAGAGATGGTTAGGGCAGCCATTGAGGCTTCGAAACGTG AGGCTGAGTTGGCAGAGCAAGAGAAGGCATTACGTGAGCGTAAGGGAAAAGTTGGAGTATCGGAAATAGGAGCATCTGAGCCTGAGAATGTAATTGCACC TTCCAATGGAGGGTTAGAAAAAGGTGGATCATTTATCGAGGATGAAGTTGAAGATGTGGAGGAACAGCCACTGGTCAGTCGGAGATCGAGAAATGCATCT TCAAGCTCTATGGAATCTGCCAAAGATGTAGCTACTGAGTCCGACCTGCCATCAAGTCCCATAGACAACAATCCCAACAGTGAAACACAGACAAATGGGA ATGCTTTCCCTGAGGAGTGGGGTGGCATTTCGTCCGAGGAGCACGATGAGGCAGTGATGCTTGAGGCAGCCATGTTTGGGGGAGTGCCTGAGGGGTCCGG ATATCAGTTCCCTTATGCACCTCATCAATTCATGCAAAGAGAAAGCCCTTACCCTAGGCCAGCACCACGTCCTCCATCTCCCTCTTTAGAAGCCCAACGT TTGATCCGTGAACAACAGGATGATGAGTACCTTGCTTCATTGGCTGCTGATAGAGAGAAAGAGATGAAGGCCCTGGAGGAAGTTGAAGCTCGGCGTTTGC AAGAAGAAGCAGCCAGGGAAGCTGCTCTTGAAGAAGAAAAACTGAAAGAGGAAGAATGCCGCAGGAAGTTGGAGGAAGAGCAGGAAATGGAGAGGCAGTT AGCTGCAAAAGAAGCTTCACTACCTCAAGAGCCAACTCCGGATGAAGAGAATGCTGTAACACTTTTGGTGCGCATGCCTGATGGCACGCGCCATGGCCGC CGGTTTCTCAAGTCTGACCGCTTGCAGTCCCTCTTCGACTTCATTGATGTCACCAGAGTCGTCAAGCCTGGCACTTACCGACTGGTGAGGCCATACCCTA GGCAGGCCTTCAGCGATGGACATAGCGCCCTCACGCTGACCGAACTCGGCCTGACCAGCAAACAAGAAGCCTTATTTCTGGAGCTGATCTAG
AA sequence Show only first row Show all	>Lus10029591 pacid=23152138 polypeptide=Lus10029591 locus=Lus10029591.g ID=Lus10029591.BGIv1.0 annot-version=v1.0 MATPEQEAINTFISITGATESVAVQRLREHRGDLNAAVNAHFTEGDRSSLNPPSVPPHEDDIMDIDDPIETAPPRNPLSLLADPAVVNPFSLLDPQFRRS FFEGGSDFMNRGPFVTPPRQVREIPIEIKDTPNASGRSGHGPVIEDVTGTDYAHESGIRGTVIVSDDEEDNGDVILPSLNTTAARQDDQDIDGLGGASND MPRPSAPLPDSSLEYGNDIEEEMVRAAIEASKREAELAEQEKALRERKGKVGVSEIGASEPENVIAPSNGGLEKGGSFIEDEVEDVEEQPLVSRRSRNAS SSSMESAKDVATESDLPSSPIDNNPNSETQTNGNAFPEEWGGISSEEHDEAVMLEAAMFGGVPEGSGYQFPYAPHQFMQRESPYPRPAPRPPSPSLEAQR LIREQQDDEYLASLAADREKEMKALEEVEARRLQEEAAREAALEEEKLKEEECRRKLEEEQEMERQLAAKEASLPQEPTPDEENAVTLLVRMPDGTRHGR RFLKSDRLQSLFDFIDVTRVVKPGTYRLVRPYPRQAFSDGHSALTLTELGLTSKQEALFLELI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Lus10029591 [exp]	0	1
AT1G21380			Target of Myb protein 1 (.1)		Lus10029739 [exp]	1.0	0.9387
AT1G15130			Endosomal targeting BRO1-like ...		Lus10035265 [exp]	1.4	0.9255
AT5G14540			Protein of unknown function (D...		Lus10032138 [exp]	2.0	0.9197
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10035827 [exp]	3.9	0.9126
AT3G21610			Acid phosphatase/vanadium-depe...		Lus10000883 [exp]	4.9	0.8759
AT2G31390		STH	pfkB-like carbohydrate kinase ...		Lus10009526 [exp]	5.2	0.9230
AT1G32540		LOL1	lsd one like 1 (.1.2.3)		Lus10038409 [exp]	5.9	0.8705
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10036609 [exp]	7.7	0.8850
AT5G45900		ATAPG7, ATG7, A...	AUTOPHAGY-RELATED 7, AUTOPHAGY...		Lus10025416 [exp]	9.0	0.8745
AT5G49610			F-box family protein (.1)		Lus10028682 [exp]	9.2	0.8837

Compare expression of checked genes

Lus10029591 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.