Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12710 393 / 2e-138 ATPP2-A12 phloem protein 2-A12 (.1) AT1G63090 356 / 8e-124 ATPP2-A11 phloem protein 2-A11 (.1) AT3G61060 337 / 2e-116 ATPP2-A13 phloem protein 2-A13 (.1.2) AT5G52120 291 / 3e-98 ATPP2-A14 phloem protein 2-A14 (.1) AT3G53000 278 / 6e-93 ATPP2-A15 phloem protein 2-A15 (.1) AT2G02360 99 / 5e-24 ATPP2-B10 phloem protein 2-B10 (.1) AT2G02340 87 / 2e-19 ATPP2-B8 phloem protein 2-B8 (.1) AT2G02230 87 / 2e-19 ATPP2-B1 phloem protein 2-B1 (.1) AT1G09155 84 / 3e-18 ATPP2-B15 phloem protein 2-B15 (.1) AT5G24560 82 / 6e-18 ATPP2-B12 phloem protein 2-B12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024494 [exp] 478 / 1e-171 AT1G12710 377 / 6e-132 phloem protein 2-A12 (.1) Lus10027423 [exp] 303 / 7e-103 AT3G61060 320 / 1e-109 phloem protein 2-A13 (.1.2) Lus10005769 [exp] 295 / 1e-99 AT3G61060 308 / 3e-105 phloem protein 2-A13 (.1.2) Lus10008642 [exp] 293 / 1e-98 AT3G53000 470 / 6e-169 phloem protein 2-A15 (.1) Lus10025666 [exp] 104 / 1e-25 AT5G24560 219 / 5e-69 phloem protein 2-B12 (.1) Lus10020674 [exp] 100 / 3e-24 AT1G09155 266 / 7e-89 phloem protein 2-B15 (.1) Lus10018171 [exp] 96 / 2e-22 AT2G02240 219 / 2e-69 maternal effect embryo arrest 66, F-box family protein (.1) Lus10029872 [exp] 94 / 3e-22 AT1G09155 272 / 3e-91 phloem protein 2-B15 (.1) Lus10020673 [exp] 88 / 9e-20 AT1G09155 272 / 2e-91 phloem protein 2-B15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G121900 [exp] 456 / 3e-163 AT1G12710 401 / 9e-142 phloem protein 2-A12 (.1) Potri.001G109800 [exp] 442 / 9e-158 AT1G12710 408 / 1e-144 phloem protein 2-A12 (.1) Potri.012G136200 [exp] 369 / 3e-129 AT5G52120 353 / 3e-123 phloem protein 2-A14 (.1) Potri.015G138600 [exp] 368 / 2e-128 AT5G52120 356 / 3e-124 phloem protein 2-A14 (.1) Potri.014G075800 [exp] 368 / 2e-128 AT3G61060 397 / 4e-140 phloem protein 2-A13 (.1.2) Potri.006G117600 [exp] 288 / 3e-97 AT3G53000 486 / 2e-175 phloem protein 2-A15 (.1) Potri.005G022000 [exp] 90 / 9e-21 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.001G050100 [exp] 89 / 2e-20 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.018G016100 [exp] 87 / 1e-19 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1) Potri.018G015800 [exp] 87 / 2e-19 AT2G02240 242 / 1e-78 maternal effect embryo arrest 66, F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029593 pacid=23152165 polypeptide=Lus10029593 locus=Lus10029593.g ID=Lus10029593.BGIv1.0 annot-version=v1.0 ATGGGTGCGAATTTCTCGTTGGTGTTCATGGATCCGGCTGCTACGTGTTCTCTGTTCTCCGCCTTCTCTCTCCCGAGTCACCAGCCGCCGAAGCAGCCTC AGAGGCCGACGCTAGGCGACGTGCCGGAGAGCTGCGTGGCTCCGGTTCTGGCGAATTTGGACCCGGTTGAGATTTGCAAGCTGGCGACTTTGAACAGGGC GTTTCGTGGCGCGTCATGGGCTGATTTCGTCTGGGAATCGAAGCTTCCGGAGAATTACCGGACTCTCATGGAGAAAGTTCTGGGCGTTGTTGATGTTGAC GGCGACGGCGGCGGGAAGAGGATTAGTAAGCGCGAGATTTACACCAGGCTTTGCGCTGCCAATTCTTTCGACGGCGGCACAAAGAAAGTGTGGCTGGATA AGACTACAGGTGGTGCCTGTCTATCCATTGCTTCAAAGGGATTGTCGATTACCGGAATCGATGATCGGAGATACTGGAATCATATTCCCAGTGATGAATC AAGATTCGCCTCTGTAGCATATCTCCAGCAGATATGGTGGTTCGAGGTAAGCGGGGAATTCGAGTTCCCCTTCCCAGCAGGGACTTACAGTCTCTTCTTC AGGCTACAGCTAGGACGAACTGGCAAGAGATTCGGCCGCAGGATCTGCAACACGGAGCACGTCCATGGCTGGGATCGAAAGCCAGTCCGGTTCGAGCTGT GGACATCTGGCGGTCAGTATGCATCTTCCCAGTGCTTTTTGAACGATACCGGGAAGTGGAATCTGTACCATGCCGGAGACTTTGTCGTCGAGAAGGGTTT GAACACACCGACGAAGCTCCGGTTGTCGATGACACAGATCGATTGTACACATACCAAGGGAGGTCTGTCTTTGGACAGTGTACTAGTCTTCCCATGTAAA TTTAGAGAAAGGTTGAAGCATTTTTAG
AA sequence Show only first row Show all	>Lus10029593 pacid=23152165 polypeptide=Lus10029593 locus=Lus10029593.g ID=Lus10029593.BGIv1.0 annot-version=v1.0 MGANFSLVFMDPAATCSLFSAFSLPSHQPPKQPQRPTLGDVPESCVAPVLANLDPVEICKLATLNRAFRGASWADFVWESKLPENYRTLMEKVLGVVDVD GDGGGKRISKREIYTRLCAANSFDGGTKKVWLDKTTGGACLSIASKGLSITGIDDRRYWNHIPSDESRFASVAYLQQIWWFEVSGEFEFPFPAGTYSLFF RLQLGRTGKRFGRRICNTEHVHGWDRKPVRFELWTSGGQYASSQCFLNDTGKWNLYHAGDFVVEKGLNTPTKLRLSMTQIDCTHTKGGLSLDSVLVFPCK FRERLKHF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12710		ATPP2-A12	phloem protein 2-A12 (.1)		Lus10029593 [exp]	0	1
AT3G16720		ATL2	TOXICOS EN LEVADURA 2 (.1)		Lus10006493 [exp]	1.4	0.8672
AT2G46080			unknown protein		Lus10018821 [exp]	3.7	0.8255
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10012031 [exp]	9.5	0.7999
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10031029 [exp]	9.9	0.8217
AT2G41835	C2H2ZnF		zinc finger (C2H2 type, AN1-li...		Lus10012196 [exp]	14.3	0.8145
AT3G62260			Protein phosphatase 2C family ...		Lus10009993 [exp]	15.9	0.7749
AT2G46080			unknown protein		Lus10007920 [exp]	19.4	0.7816
AT5G13200			GRAM domain family protein (.1...		Lus10035154 [exp]	20.5	0.7772
AT2G40000		ATHSPRO2	ARABIDOPSIS ORTHOLOG OF SUGAR ...		Lus10028275 [exp]	24.6	0.7936
AT1G09070		(AT)SRC2, (AT)S...	soybean gene regulated by cold...		Lus10029901 [exp]	27.8	0.8039

Compare expression of checked genes

Lus10029593 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.