Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62090 139 / 2e-34 SLK2 SEUSS-like 2 (.1.2) AT4G25515 127 / 1e-30 SLK3 SEUSS-like 3 (.1) AT4G25520 125 / 5e-30 SLK1 SEUSS-like 1 (.1) AT1G43850 125 / 6e-30 SEU SEUSS transcriptional co-regulator (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006324 [exp] 826 / 0 AT5G62090 277 / 9e-84 SEUSS-like 2 (.1.2) Lus10000198 [exp] 540 / 0 AT5G62090 174 / 8e-48 SEUSS-like 2 (.1.2) Lus10015002 [exp] 209 / 2e-58 AT5G62090 439 / 3e-143 SEUSS-like 2 (.1.2) Lus10038880 [exp] 141 / 5e-35 AT5G62090 557 / 0.0 SEUSS-like 2 (.1.2) Lus10029756 [exp] 134 / 1e-32 AT1G43850 721 / 0.0 SEUSS transcriptional co-regulator (.1.2) Lus10042785 [exp] 132 / 5e-32 AT1G43850 721 / 0.0 SEUSS transcriptional co-regulator (.1.2) Lus10028635 [exp] 127 / 1e-30 AT1G43850 518 / 5e-174 SEUSS transcriptional co-regulator (.1.2) Lus10018933 [exp] 117 / 2e-27 AT1G43850 435 / 1e-143 SEUSS transcriptional co-regulator (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G121800 [exp] 168 / 3e-44 AT5G62090 357 / 1e-111 SEUSS-like 2 (.1.2) Potri.015G138500 [exp] 137 / 7e-34 AT5G62090 551 / 0.0 SEUSS-like 2 (.1.2) Potri.012G136100 [exp] 136 / 2e-33 AT5G62090 536 / 1e-178 SEUSS-like 2 (.1.2) Potri.002G072900 [exp] 123 / 4e-29 AT1G43850 569 / 0.0 SEUSS transcriptional co-regulator (.1.2) Potri.005G186900 [exp] 121 / 2e-28 AT1G43850 612 / 0.0 SEUSS transcriptional co-regulator (.1.2) Potri.007G109400 [exp] 111 / 3e-25 AT1G43850 546 / 0.0 SEUSS transcriptional co-regulator (.1.2) Potri.005G058501 [exp] 80 / 9e-16 AT1G43850 158 / 2e-41 SEUSS transcriptional co-regulator (.1.2) Potri.013G089900 [exp] 61 / 1e-10 AT1G43850 172 / 6e-50 SEUSS transcriptional co-regulator (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029594 pacid=23152052 polypeptide=Lus10029594 locus=Lus10029594.g ID=Lus10029594.BGIv1.0 annot-version=v1.0 ATGGCATCAGAGGCTTTTTTGGATCCCAGTTATCTCATGGCATTGCGGTGCTTGGCATCAGCTAATGTCACTGGAGACAATATGATGCAGAAAGAAGGGC GTTTCCACAACGTAGCAGCTTCCATTGTGAATGCTTCATCTTCTACCACAACAAGCGACTCCTCAGTTGTGCAGCAGGAATCATACGAAAGTCAAAAGCG AGCACAAGTGGCTAAAAGGAAACAGCAGCAAGGTACGTCTCAGGCTAGATTACCGAAGAAGAAGTCAACTATTGATCCCACCAAGAAAGAGCTTTCAGCT TCAAGTCAGACACAAATAGGAAACACATTGGAAACCAAGCAAGATGCTTTCTTACAACAGCAAGTAATGCAGCATCTACTGCAGCAGAATTCAGTTTCTC CTCAGCCACAAGTTGGCATTCCCCTGCTGGAGAATTCGAGTCAGAAGAGAACTTTTCAGATATCGCCACATTTACCGGGAGTTGACTTGAGGCAACTCCA GCAGGAGAAGCAGGTAAAGGAATACCTTCAACAACTTGCCTGCAAACGTGCACATCCTGCTCCACAGCTTTTCAATGGCAACGTATGCTTCCGTCGGGTA ATGCAGTACATGTATCATCTTCAGCATAGGCCATCGAGCAATGAAATATGTTACTGGAGGAAGTTTGTCGCAGAGTATTTTGCACCATGTGCCAAGAAAA GGTGGTGCTTGTCTAAATGTGATAGCGTTCAGGCAGCTATGAACAATTCGTCTAATGAGTTAACCTTGTTTGGCCAGGATGCATGGCACTGTGAGCTATG TGGTTCTACATCTGGAAGAGGCTTCGAGGCGACCTTTGAAGTTCTCCCTAGGCTTACCAAAATACAGTTCGAGACCGGAGTTAATGATTTCATCCGTACT GCACAGAAGTATCAGAAAGCAATTGATGGTGGTGGACGAGGAAGTACCCCACCTAATCTACGAGAAAATAGCAATGTGTTGTTGGCAGCTGGATGCAGTC TTGAGCGAAGTTTCGAATCGCAGCTTGCTGGCGACATAGGTTTTCCCAAGCGATACATCCGATGCTTGCAGATTGCTGAAATAGTGAATAGTATGAAAGA CTTGATGACTTTCAGTTGCCAGAACAAGATTGGAGCCATAGAGAGTTTGAAGACTTACACTGAGAAGTTCTCGGCGAATGTCCAGGAACCAACCGAGGAA TCTGACTTGCTGAGAAAGGATGACCGCATAATCAAGGGAAAAGGTAGAGTCTTTACCACAGCCGAAGAGGCAGCTTTGGCCGATTATGGAAGTTACATGA AATTACTGAGTCAAGCATCCGATCTTAATGTAGCTGGATTCGCAGAACCTTCTTATCTATACAAACAGTTCAATCAAGGTTCTCAGATATCCGTCCCAGA GTTCATCCAAAACGTCCCTTCTTCAAACTACTCTACCTGTGAGAGAAGCATCATACAAGAGCATATGATGAAGCTACTACAGAGAGCAAGCAACAAGAGC CAGAACACAGGTTGGACCGAGAGAGAAGTGGTAAACAATACAATCGATGACATGTTTGCTGGTTTGCCAACAGCGTATAGTTCCTGGAATAGGCTGCCTT CTGATCACTCATCATCGGCACAGAACTGTACCGCCGCCAGTAGCTGGGAGTCTTCGAGTGATCGTAGTATCATCAACAAGGGAAGCAACCATGTAGAAAC GCTTAATCATCAGTCAGAGGAATACGAAGCTTTCCGCAAGCTATTCGAGAACAGTATGTCTGATGGTTCTTTCGGAGACTCCACAAGCTTCGGTTGGAAG GGATGA
AA sequence Show only first row Show all	>Lus10029594 pacid=23152052 polypeptide=Lus10029594 locus=Lus10029594.g ID=Lus10029594.BGIv1.0 annot-version=v1.0 MASEAFLDPSYLMALRCLASANVTGDNMMQKEGRFHNVAASIVNASSSTTTSDSSVVQQESYESQKRAQVAKRKQQQGTSQARLPKKKSTIDPTKKELSA SSQTQIGNTLETKQDAFLQQQVMQHLLQQNSVSPQPQVGIPLLENSSQKRTFQISPHLPGVDLRQLQQEKQVKEYLQQLACKRAHPAPQLFNGNVCFRRV MQYMYHLQHRPSSNEICYWRKFVAEYFAPCAKKRWCLSKCDSVQAAMNNSSNELTLFGQDAWHCELCGSTSGRGFEATFEVLPRLTKIQFETGVNDFIRT AQKYQKAIDGGGRGSTPPNLRENSNVLLAAGCSLERSFESQLAGDIGFPKRYIRCLQIAEIVNSMKDLMTFSCQNKIGAIESLKTYTEKFSANVQEPTEE SDLLRKDDRIIKGKGRVFTTAEEAALADYGSYMKLLSQASDLNVAGFAEPSYLYKQFNQGSQISVPEFIQNVPSSNYSTCERSIIQEHMMKLLQRASNKS QNTGWTEREVVNNTIDDMFAGLPTAYSSWNRLPSDHSSSAQNCTAASSWESSSDRSIINKGSNHVETLNHQSEEYEAFRKLFENSMSDGSFGDSTSFGWK G

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10029594 [exp]	0	1
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10006324 [exp]	1.0	0.9342
AT4G13600			Carbohydrate-binding X8 domain...		Lus10032601 [exp]	6.3	0.8626
AT5G58610			PHD finger transcription facto...		Lus10015266 [exp]	8.8	0.8181
AT3G14570		ATGSL4, ATGSL04	glucan synthase-like 4 (.1.2)		Lus10042478 [exp]	9.8	0.8282
AT1G71110			unknown protein		Lus10035272 [exp]	10.0	0.8218
AT5G55540		LOP1, TRN1	LOPPED 1, tornado 1 (.1)		Lus10003767 [exp]	12.5	0.8558
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10012020 [exp]	13.4	0.8544
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10000198 [exp]	14.1	0.7637
AT1G42540		ATGLR3.3	glutamate receptor 3.3 (.1)		Lus10016031 [exp]	15.9	0.8207
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10011585 [exp]	17.0	0.8313

Compare expression of checked genes

Lus10029594 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.