Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16280 622 / 0 SWA3, AtRH36 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) AT5G60990 312 / 4e-100 DEA(D/H)-box RNA helicase family protein (.1) AT4G16630 237 / 2e-68 DEA(D/H)-box RNA helicase family protein (.1) AT1G55150 216 / 5e-63 DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 211 / 1e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G65900 210 / 8e-60 DEA(D/H)-box RNA helicase family protein (.1) AT3G18600 200 / 1e-56 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G33730 202 / 3e-56 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58510 199 / 4e-56 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT1G20920 200 / 4e-55 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006326 [exp] 895 / 0 AT1G16280 673 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10031761 [exp] 318 / 2e-102 AT5G60990 679 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10031182 [exp] 317 / 5e-102 AT5G60990 674 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10042754 [exp] 242 / 4e-70 AT1G16280 983 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10015627 [exp] 224 / 7e-66 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10037646 [exp] 223 / 1e-65 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10027240 [exp] 205 / 3e-58 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038950 [exp] 204 / 7e-58 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10043334 [exp] 203 / 3e-57 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G084700 [exp] 615 / 0 AT1G16280 616 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Potri.007G068800 [exp] 324 / 9e-105 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.006G249100 [exp] 303 / 9e-97 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.016G013900 [exp] 287 / 6e-91 AT5G60990 579 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G241300 [exp] 241 / 4e-70 AT4G16630 829 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.003G038300 [exp] 218 / 9e-64 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.019G130900 [exp] 213 / 2e-61 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.013G158000 [exp] 213 / 2e-61 AT1G55150 322 / 3e-104 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G083000 [exp] 205 / 5e-58 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G250700 [exp] 201 / 1e-56 AT3G18600 740 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10029596 pacid=23152035 polypeptide=Lus10029596 locus=Lus10029596.g ID=Lus10029596.BGIv1.0 annot-version=v1.0 ATGTCGATGGTTCAAGTAAAGTCGGGCTTTGAAGGGCCACCGTCTAAAGCCCATCTCGGCCCAGCATTTTGCGGAGAAGTCCGTACAGTCCAAAACCAGG CAGCCGCAGCAGCTAAACCTCTTCCCACCGGAACGCCAACACTATTCAGATTTCAGAGCTTTGATTCTCCATCCTCTGTTGTACTTCTTTCTCCTCTCGC CGGTATCTCGGAGTTTCTCCCCCTTCAGCTGGTTGCCCTGGTTCTCCAGTTCAAACCTGCACTGCTGAAAATTCCGGCTCGACCGAGCCGTACGCAGCTG CAAGTAGCCATGGAAGACCATGAAGAAGAAACCATCGTTGATCGAGGTTTCCAACTCTTCTCCAAACCCCGCAGACCCCTGAAAAAATCGATTCCAGTCG TTAAACCGGAAAGCCCCAGCCTTCCATCGGAACTTCCCAAAATTGAGAAAGAAACATCATCATCATCCGCCGCCTTAGAATCCGACGGCACTTCCTTCGA AGATTTGGGCCTCTCGGATTGGGCAATCCAAACATGCAAAGAGCTGGGCATGAAGCGCCCAACTCCGGTTCAATCTCACTGCATCCCCAAAATCCTAGCT GGCCGTGACGTCCTCGGATTGGCCCAGACCGGAAGTGGGAAAACCGCCGCTTTCGCTCTCCCGATCCTCCACCGTCTGGCGGAGGATCCTTACGGAGTGG CGGCGCTTGTGATGACTCCCACCAGGGAGCTTGCTTTTCAGTTGGCTGAGCAGTTCAAAGCACTTGGTTCTTCTTTGCAATTGAGGTGTACGGTTGTGGT TGGCGGTATGGATATGCTGAACCAATCTCAGATGTTGATGCGTAGGCCTCATGTCGTCATTGCCACTCCTGGTAGGATTAAGGTCTTGATGGAAGATAAT CCTGATTTGCCTGCTGTTTTCTCCAGAACTAAGTTCCTAGTTCTGGATGAGGCGGATAGGCTTTTGGATGCCGGGTTTGAGGCGGAATTGAGAACGGTGT TTCGGTGCTTACCGAAGAATCGACAGACACTTTTGTTTTCTGCAACAATGACGAGTGATTTGGAGACGCTGCTGGAGGTTTCGGCAAATAAGGCGTACTT CTACGAGGCGTATGAGGGGTTTAAGACTGTTGAGACTCTGAAGCAACAGTATGTTTTCATACCTAAGAACGTGAAGGAGGTTTATCTGTCCTATATTCTG TCCAGGATGGAAGAGATGGGTATTCGATCAGCTATGATATTCGTTTCCACTTGCAGGAGTTGCCAACTTCTAAGTTCGCTACTGGAAGTACTTGGCCAGA AGGCTGCAGCACTACATTCCTACAATGCACAGTCCCTGAGACTCTCTGCGCTGCATGAGTTCAAGGCCGAGAAAGTTCCTGTATTGATTGCAACAGATGT CGCCAGTCGGGGTCTGGACATTCAGACTGTCGATCTTGTTATAAACTACGATCTTCCAAGATATCCTAGAGACTATGTTCATCGTGTGGGGCGTACAGCA AGAGCTGGCCGGGGAGGGTTAGCTATAAGTTTCGTGACCGAGAATGATGTCCAACTGGTTCACAAAATTGAGGATGTCGTTGGCAAGAAGCTTGAGGAGT TTGAGTGCAAAGAGAAGGAAGTCCTTTTGGAGATTACAAAGGTATATAAGGCTAAACGTGTGGCGACAATGAAGATGATGGATGATGGAATTGACGAAAA GGTTGAAGAAAGGAAGAAGCAGAAGTTGAAAGCATTAGCAGACAAAGGTTTGCTAACTAAGAAAAACAAAAGTAACAAGAAACAGAGAACGTCATAA
AA sequence Show only first row Show all	>Lus10029596 pacid=23152035 polypeptide=Lus10029596 locus=Lus10029596.g ID=Lus10029596.BGIv1.0 annot-version=v1.0 MSMVQVKSGFEGPPSKAHLGPAFCGEVRTVQNQAAAAAKPLPTGTPTLFRFQSFDSPSSVVLLSPLAGISEFLPLQLVALVLQFKPALLKIPARPSRTQL QVAMEDHEEETIVDRGFQLFSKPRRPLKKSIPVVKPESPSLPSELPKIEKETSSSSAALESDGTSFEDLGLSDWAIQTCKELGMKRPTPVQSHCIPKILA GRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVAALVMTPTRELAFQLAEQFKALGSSLQLRCTVVVGGMDMLNQSQMLMRRPHVVIATPGRIKVLMEDN PDLPAVFSRTKFLVLDEADRLLDAGFEAELRTVFRCLPKNRQTLLFSATMTSDLETLLEVSANKAYFYEAYEGFKTVETLKQQYVFIPKNVKEVYLSYIL SRMEEMGIRSAMIFVSTCRSCQLLSSLLEVLGQKAAALHSYNAQSLRLSALHEFKAEKVPVLIATDVASRGLDIQTVDLVINYDLPRYPRDYVHRVGRTA RAGRGGLAISFVTENDVQLVHKIEDVVGKKLEEFECKEKEVLLEITKVYKAKRVATMKMMDDGIDEKVEERKKQKLKALADKGLLTKKNKSNKKQRTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16280		SWA3, AtRH36	SLOW WALKER 3, Arabidopsis tha...		Lus10029596 [exp]	0	1
AT3G03060			P-loop containing nucleoside t...		Lus10031211 [exp]	8.7	0.8683
AT5G56680		SYNC1ARATH, SYN...	EMBRYO DEFECTIVE 2755, Class I...		Lus10032704 [exp]	10.2	0.8527
AT4G20980			Eukaryotic translation initiat...		Lus10011171 [exp]	13.6	0.8570
AT1G26460			Tetratricopeptide repeat (TPR)...		Lus10004649 [exp]	13.9	0.8664
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Lus10018149 [exp]	16.2	0.8429
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10030542 [exp]	19.0	0.8399
AT1G72440		SWA2, EDA25	SLOW WALKER2, embryo sac devel...		Lus10037444 [exp]	19.7	0.8438
AT5G22100			RNA cyclase family protein (.1...		Lus10013351 [exp]	22.7	0.8338
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10031477 [exp]	26.5	0.8466
AT1G72440		SWA2, EDA25	SLOW WALKER2, embryo sac devel...		Lus10013182 [exp]	27.0	0.8433

Compare expression of checked genes

Lus10029596 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.