Lus10029597 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G16740 212 / 2e-72 Ribosomal protein L20 (.1)
ATCG00660 57 / 1e-11 ATCG00660.1, RPL20 ribosomal protein L20 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006327 259 / 5e-91 AT1G16740 213 / 1e-72 Ribosomal protein L20 (.1)
Lus10034785 250 / 1e-86 AT1G16740 212 / 2e-71 Ribosomal protein L20 (.1)
Lus10033326 244 / 3e-85 AT1G16740 206 / 3e-70 Ribosomal protein L20 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G119300 229 / 2e-79 AT1G16740 235 / 1e-81 Ribosomal protein L20 (.1)
Potri.004G095475 100 / 6e-29 AT1G16740 107 / 4e-32 Ribosomal protein L20 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00453 Ribosomal_L20 Ribosomal protein L20
Representative CDS sequence
>Lus10029597 pacid=23152096 polypeptide=Lus10029597 locus=Lus10029597.g ID=Lus10029597.BGIv1.0 annot-version=v1.0
ATGTTGAACAAGAAGGAGATTTTCAAGCTAGCAAAAGGGTTTAGGGGGAGGGCAAAGAACTGCATCAGGATAGCGAGAGAGAGGGTTGAGAAGGCGTTGC
AGTATTCCTACAGGGACCGTAGGAACAAGAAGCGTGACATGCGCTCGCTGTGGATTCAACGAATCAGTGCTGGCACCAGGCAGCATAATGTTCATTATGG
ACACTTCATGCATGGGCTTAAGAAAGAGAACATCCAGCTGAACCGGAAAGTGTTGTCAGAGGTATCCATGCACGAGCCGTACAGTTTCAAGGCACTGGTA
GACATCTCTCGTACTGCTTTCCCAGGAAACAAACACATCTTCCATCGTCCCAGGAAGGTAGACATGCCAGTCAATGTGTAG
AA sequence
>Lus10029597 pacid=23152096 polypeptide=Lus10029597 locus=Lus10029597.g ID=Lus10029597.BGIv1.0 annot-version=v1.0
MLNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRISAGTRQHNVHYGHFMHGLKKENIQLNRKVLSEVSMHEPYSFKALV
DISRTAFPGNKHIFHRPRKVDMPVNV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G16740 Ribosomal protein L20 (.1) Lus10029597 0 1
AT4G25340 ATFKBP53 FK506 BINDING PROTEIN 53 (.1.2... Lus10031121 7.5 0.7947
AT5G12100 pentatricopeptide (PPR) repeat... Lus10014365 14.1 0.7232
AT3G57150 ATNAP57, ATCBF5... homologue of NAP57 (.1) Lus10035418 17.8 0.7883
AT3G25230 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rota... Lus10002338 18.9 0.7875
AT1G80270 PPR596 PENTATRICOPEPTIDE REPEAT 596 (... Lus10012112 21.6 0.7576
AT3G06200 P-loop containing nucleoside t... Lus10021947 24.0 0.7337
AT1G09830 Glycinamide ribonucleotide (GA... Lus10013696 29.3 0.7462
AT5G62440 Protein of unknown function (D... Lus10021669 34.6 0.7170
AT5G60670 Ribosomal protein L11 family p... Lus10015085 35.3 0.7331
AT3G48250 BIR6 Buthionine sulfoximine-insensi... Lus10043322 35.9 0.7177

Lus10029597 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.