Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57010 55 / 4e-09 Calcium-dependent phosphotriesterase superfamily protein (.1) AT3G57030 52 / 5e-08 Calcium-dependent phosphotriesterase superfamily protein (.1) AT5G22020 52 / 6e-08 Calcium-dependent phosphotriesterase superfamily protein (.1) AT1G08470 49 / 7e-07 SSL3 strictosidine synthase-like 3 (.1) AT2G41290 47 / 2e-06 SSL2 strictosidine synthase-like 2 (.1) AT3G57020 46 / 4e-06 Calcium-dependent phosphotriesterase superfamily protein (.1.2) AT3G59530 42 / 0.0001 LAP3 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) AT2G41300 42 / 0.0002 SSL1 strictosidine synthase-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006331 [exp] 117 / 1e-31 AT3G57030 239 / 1e-76 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10006330 [exp] 98 / 4e-30 AT3G57030 224 / 2e-70 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10029599 [exp] 86 / 5e-20 AT3G57030 204 / 3e-63 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10006329 [exp] 79 / 1e-18 AT2G41290 67 / 2e-13 strictosidine synthase-like 2 (.1) Lus10008451 [exp] 47 / 3e-06 AT1G08470 600 / 0.0 strictosidine synthase-like 3 (.1) Lus10019377 [exp] 46 / 6e-06 AT3G59530 609 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Lus10008151 [exp] 46 / 6e-06 AT3G59530 613 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Lus10013370 [exp] 44 / 3e-05 AT1G08470 520 / 0.0 strictosidine synthase-like 3 (.1) Lus10034411 [exp] 0 / 1 AT3G57030 232 / 1e-74 Calcium-dependent phosphotriesterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G109966 [exp] 58 / 4e-10 AT3G57030 318 / 5e-107 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.T015518 [exp] 58 / 4e-10 AT3G57030 318 / 5e-107 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.016G037800 [exp] 47 / 4e-07 AT2G41290 68 / 8e-15 strictosidine synthase-like 2 (.1) Potri.006G040900 [exp] 49 / 6e-07 AT2G41290 381 / 4e-131 strictosidine synthase-like 2 (.1) Potri.001G214500 [exp] 48 / 8e-07 AT1G08470 628 / 0.0 strictosidine synthase-like 3 (.1) Potri.016G037700 [exp] 47 / 2e-06 AT2G41290 402 / 3e-139 strictosidine synthase-like 2 (.1) Potri.016G037900 [exp] 45 / 1e-05 AT3G57030 523 / 0.0 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.012G046200 [exp] 40 / 0.0004 AT1G74000 206 / 2e-64 strictosidine synthase 3 (.1) Potri.007G130700 [exp] 39 / 0.001 AT3G59530 662 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029600 pacid=23152142 polypeptide=Lus10029600 locus=Lus10029600.g ID=Lus10029600.BGIv1.0 annot-version=v1.0 ATGGACACAAAATCACTTGTGTTGTTCTTCATCTCTCTGATCATCGACTTTTGTTCAATTCTCTGTAATCAGACGTTTCTCAACCAACTCCAGAAACTCG ATCTTCCGACAGGACTTGTCGGCCCAGAAAGCACAGCTTTCGACTGCGAAGAACAAGGCCCTTACGTTGGTGTCTCCGACCGAAGGATCTTCAAGTGGGA TTCCCACGGTTGGGTAAAATTCGCGGGACCATCAGGTTTATCAAAGCAGGGATGCTCAGAACATAGTGAAAACCCTAGACCAAACAGGGAGGGTATTCAG CTACGATCCTCACACAAAGAACCTGACACTTATAGCCACATCGTTGGCTTTCCCCAACGGAGTGGCACTCAACGTGGACAACTCTTATCTACTAGTAACC TTAACATCGATCAAATGATCCTTCAATTCCCACTCAATCTCATGCCAGAGCCTGGATTCCCTACACCGAAGCTGTTTGCAGAAGTTCCAGAATTCCCCGA CAACATTAGTAGGTGCCCTCCTATTGTTGGCGGGGAGGAACACTTTGGGTCGGATTAA
AA sequence Show only first row Show all	>Lus10029600 pacid=23152142 polypeptide=Lus10029600 locus=Lus10029600.g ID=Lus10029600.BGIv1.0 annot-version=v1.0 MDTKSLVLFFISLIIDFCSILCNQTFLNQLQKLDLPTGLVGPESTAFDCEEQGPYVGVSDRRIFKWDSHGWVKFAGPSGLSKQGCSEHSENPRPNREGIQ LRSSHKEPDTYSHIVGFPQRSGTQRGQLLSTSNLNIDQMILQFPLNLMPEPGFPTPKLFAEVPEFPDNISRCPPIVGGEEHFGSD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57010			Calcium-dependent phosphotries...		Lus10029600 [exp]	0	1

Compare expression of checked genes

Lus10029600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.