Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60430 330 / 1e-115 ARPC3 actin-related protein C3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006335 [exp] 361 / 9e-128 AT1G60430 332 / 3e-118 actin-related protein C3 (.1.2) Lus10018909 [exp] 355 / 2e-125 AT1G60430 330 / 9e-118 actin-related protein C3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G123100 [exp] 328 / 7e-115 AT1G60430 332 / 2e-118 actin-related protein C3 (.1.2) Potri.006G063400 [exp] 322 / 2e-112 AT1G60430 322 / 2e-114 actin-related protein C3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04062 [flax] [poplar] P21-Arc ARP2/3 complex ARPC3 (21 kDa) subunit
Representative CDS sequence Show only first row Show all	>Lus10029603 pacid=23151947 polypeptide=Lus10029603 locus=Lus10029603.g ID=Lus10029603.BGIv1.0 annot-version=v1.0 ATGATCAGGTTGGGTTCTTACCTGGATTACTTACTCACCAGGTGTTTTCCAGATCTGTTCGGTCGGAAGAAAACCAGCCGGTACTGCCTGAAGTTTGCTC CATCTAGAGATTTCGTCGAAGAAGCAGAAACTAGGGGTCATAGCCTGCCGGAACAAACTTTCCGTCAGGGCTCGTTCTCACCGTTGCACAACTGCATCGA CAACGCCGATTCCTCGTCCAAATCTCCTGTAATTGATCGTCAAAGTGGGAGCAACGACTTTATCGAAGCTTTTGGCATTGGGAGTTTTCCAATCCCAATT TATATCTGGGCTTCTGTTTTAGAGCAAGAAATGGTTTATCACTCCAGTTTCGTGGATGATGATGGAGTTACAAAAGCTTGCGGCTGCCCGTTACTTCCTT TGAAATCCCATATTAAGGGTCCTGCTCCAACTTCAAATCAAGATAAAACTGATATAGTCGACGAAGCGATAACCTTCTTTCGTGCAAACGTCTTCTTTAG AAACTTCCACATCAAGAGCCCTGCCGATAAGCTTCTAATCTACTTGACATTCTACATCAACGTTGCTTTGAAGAGGTTAGAAGGTTGCAGAACTTTGGCC GTAGGTACTAAAGCCATCATTAACTTGGGTTTGGAGAATGTTCCAGTCCCAGGAGAGTCTGGTTTCCCATTTCCTGGTCTATTCATCGAACCTCAATCTC ACAGTGAAGCAGAGCTATTCAGGGATTATCTGAAGCAGATAAGAGAAGAAACAAGTGGGAGGTTATTGAGTGTTGCCTACAGACACAACGGCACTCCGAA CAAATGGTGGCTCGCATTTGCAAAGAGGAAGTTCATGAATGTCATTGCTCTTTGA
AA sequence Show only first row Show all	>Lus10029603 pacid=23151947 polypeptide=Lus10029603 locus=Lus10029603.g ID=Lus10029603.BGIv1.0 annot-version=v1.0 MIRLGSYLDYLLTRCFPDLFGRKKTSRYCLKFAPSRDFVEEAETRGHSLPEQTFRQGSFSPLHNCIDNADSSSKSPVIDRQSGSNDFIEAFGIGSFPIPI YIWASVLEQEMVYHSSFVDDDGVTKACGCPLLPLKSHIKGPAPTSNQDKTDIVDEAITFFRANVFFRNFHIKSPADKLLIYLTFYINVALKRLEGCRTLA VGTKAIINLGLENVPVPGESGFPFPGLFIEPQSHSEAELFRDYLKQIREETSGRLLSVAYRHNGTPNKWWLAFAKRKFMNVIAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60430		ARPC3	actin-related protein C3 (.1.2...		Lus10029603 [exp]	0	1
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Lus10023776 [exp]	7.4	0.7549
AT4G26410			Uncharacterised conserved prot...		Lus10035249 [exp]	19.0	0.6848
AT5G03260		LAC11	laccase 11 (.1)		Lus10013800 [exp]	42.8	0.6562
AT1G13310			Endosomal targeting BRO1-like ...		Lus10041484 [exp]	49.6	0.6532
AT2G32760			unknown protein		Lus10022575 [exp]	58.8	0.6363
AT1G24095			Putative thiol-disulphide oxid...		Lus10030653 [exp]	74.5	0.5764
AT4G35640		ATSERAT3;2	serine acetyltransferase 3;2 (...		Lus10007424 [exp]	101.6	0.5998
AT4G13700		ATPAP23, PAP23	purple acid phosphatase 23 (.1...		Lus10009113 [exp]	106.7	0.5732
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10028944 [exp]	110.2	0.5681
AT1G02816			Protein of unknown function, D...		Lus10018818 [exp]	117.3	0.5654

Compare expression of checked genes

Lus10029603 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.