Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23020 58 / 8e-09 unknown protein AT4G11780 44 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006336 [exp] 466 / 5e-161 AT4G23020 141 / 5e-37 unknown protein Lus10024488 [exp] 85 / 3e-17 AT4G11780 81 / 4e-16 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G121100 [exp] 122 / 8e-30 AT4G23020 94 / 2e-20 unknown protein Potri.001G110900 [exp] 121 / 1e-29 AT4G23020 135 / 9e-35 unknown protein Potri.002G152700 [exp] 48 / 1e-05 AT4G00770 114 / 1e-27 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029604 pacid=23152140 polypeptide=Lus10029604 locus=Lus10029604.g ID=Lus10029604.BGIv1.0 annot-version=v1.0 ATGGCTACTCCTTCTTCTTCCTTAACTCGAAAGCCATTGGTCACAGAAACAACGGGAGGCCCTCTGATGCTGAGAGACTTCCTCATTGAAGATTTCAGCT CCTGCTCATCCAACGGCTTCAAATCCTTCCCCCGCCGCCGCCAATGCTGCCCCACCACCCCACGATTAATGCTCCCCTCAGTCGACCGGAAATCGAAATT GAAAGCGAAACCCACCCGCCATTCCAAATCCAGTTCCAAACTCTTCTGCAAGGCGTCCAAGGCCGTCATCAGAGCCGTCAAATCATCGCCCACCAGAGCC CTCAAATCATTGCCCCTCCGTCCCTCTGCCGCCGCTGGCGGCGACGGTGGAGGAGGTTCGTATAAGAAACCGCTACATCTCCTCCCTCGTAGCCTCTCCC GAAAGATTTTCAAGAAGAGCCTGTTTTGGCGGAAAGACGAATTCATCAATGACGCCGTCATTAGCGTCGCCGGAGATGTCTCCGCCGCCGCCAACATCGT TGAAGCTCCCGTGACGGGACGGTGGAGATCTTTCCGTGAGTTCCTCGAAGAACAGCTTGATGATCACACTCCTCTGCCACATGATCAGGCTTTCCTCCAC GGAAAGGCTACAGATTTGGTTCCCGTCGCCGCCGCGAGGAATTCGACGAGCAGCAGCGCACCAGTGCTTCGGAGGGGTCAAACGAAGGCGGTAAAAACGA TTTACCGTCAACTTCACCCGACGGAGTCAGCGGAGGAGGCGCAGCCGGACGGAGTCAGCGGAGGAAGCGCAGCCGTGACAGCCGGCGATGAAGAGTCCAC GACCACCCCCAGCTGGCCCGCCACTGCGGAAACTGCGAAGACATGGACAAATGATCAAGAGAAGGAGCAGTTCAGTCCGGTGTCTGTACTTGACTGTCCC TTTCAGGATGAAGAGGAAGAAGAGGAGGATGGAGTCAGTTCCCCGTTACAACGAGGCCTCGTTCTCGACGAAGGGAGTAAAAAGAAGCTTGTCAAAAGGG CGAGAAGGTTCGAGTGTCTGGATCAACTTCAGCCGATCAACTTGCAGAAGCGAATCACCGTGATCGAGGAATCATTCTCGGTATCATCGTCCTCCGATGA AACATGCTCTACATCACACAACACCAATGTCGGACCAAAGGACCCCCTCGAGCTACTTAGAATTGTGAAAGAGAGAGCATCATCGACAAGCACTAGTGAT CGTTCTGCAAGGAGCTCGATTACGAAAGGTGATCAGCTACTGTTCCTCGACTTCTTCGAAGAGAAGCTACTAAAAGGGTACGCGGAAGATGATGATGGCG AGGATGAGTTGCTGGAGGCGGTGGAAGAATGGATGAATGGGGAAGCAAAGGAGATGATGGTGGGTTGGGAAGTGAATGAGAGCAGAAATTTGTACCTTAA GGACATAGACGAGAATGGAGGGTGGAGGAACTATGCCATTGATGTGGAGCAAGAGTTAGGGTTAGAGATTGAGGATGAGATCTTCACTTCTTTGGTGAAT GAACTAGTGTTTGAAATTTGTTGA
AA sequence Show only first row Show all	>Lus10029604 pacid=23152140 polypeptide=Lus10029604 locus=Lus10029604.g ID=Lus10029604.BGIv1.0 annot-version=v1.0 MATPSSSLTRKPLVTETTGGPLMLRDFLIEDFSSCSSNGFKSFPRRRQCCPTTPRLMLPSVDRKSKLKAKPTRHSKSSSKLFCKASKAVIRAVKSSPTRA LKSLPLRPSAAAGGDGGGGSYKKPLHLLPRSLSRKIFKKSLFWRKDEFINDAVISVAGDVSAAANIVEAPVTGRWRSFREFLEEQLDDHTPLPHDQAFLH GKATDLVPVAAARNSTSSSAPVLRRGQTKAVKTIYRQLHPTESAEEAQPDGVSGGSAAVTAGDEESTTTPSWPATAETAKTWTNDQEKEQFSPVSVLDCP FQDEEEEEEDGVSSPLQRGLVLDEGSKKKLVKRARRFECLDQLQPINLQKRITVIEESFSVSSSSDETCSTSHNTNVGPKDPLELLRIVKERASSTSTSD RSARSSITKGDQLLFLDFFEEKLLKGYAEDDDGEDELLEAVEEWMNGEAKEMMVGWEVNESRNLYLKDIDENGGWRNYAIDVEQELGLEIEDEIFTSLVN ELVFEIC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23020			unknown protein		Lus10029604 [exp]	0	1
AT2G40300		ATFER4	ferritin 4 (.1)		Lus10017433 [exp]	12.9	0.7558
AT3G45770			Polyketide synthase, enoylredu...		Lus10020161 [exp]	13.9	0.7916
AT1G18210			Calcium-binding EF-hand family...		Lus10042008 [exp]	14.3	0.7631
AT1G14390			Leucine-rich repeat protein ki...		Lus10013262 [exp]	21.2	0.7876
AT4G15820			unknown protein		Lus10043415 [exp]	39.6	0.7980
AT5G65230	MYB	ATMYB53	myb domain protein 53 (.1)		Lus10039734 [exp]	44.2	0.7473
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10003590 [exp]	55.7	0.7892
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10007588 [exp]	57.5	0.7433
AT5G35700		FIM2, FIM5	FIMBRIN5, fimbrin-like protein...		Lus10006407 [exp]	67.2	0.7725
AT1G57610			Protein of unknown function (D...		Lus10019127 [exp]	106.6	0.7149

Compare expression of checked genes

Lus10029604 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.