Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12600 528 / 0 UDP-N-acetylglucosamine (UAA) transporter family (.1) AT4G23010 520 / 0 ATUTR2, UTR2 UDP-galactose transporter 2 (.1.2.3) AT2G02810 71 / 2e-13 ATUTR1, UTR1 UDP-galactose transporter 1 (.1) AT1G14360 68 / 1e-12 ATUTR3, UTR3 UDP-galactose transporter 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006337 [exp] 676 / 0 AT1G12600 555 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10009315 [exp] 533 / 0 AT1G12600 557 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10015850 [exp] 454 / 1e-161 AT1G12600 484 / 1e-173 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10030495 [exp] 71 / 1e-13 AT1G14360 587 / 0.0 UDP-galactose transporter 3 (.1) Lus10005881 [exp] 63 / 6e-11 AT5G59740 573 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10012848 [exp] 49 / 6e-06 AT1G14360 570 / 0.0 UDP-galactose transporter 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G111000 [exp] 564 / 0 AT4G23010 527 / 0.0 UDP-galactose transporter 2 (.1.2.3) Potri.003G121000 [exp] 553 / 0 AT4G23010 527 / 0.0 UDP-galactose transporter 2 (.1.2.3) Potri.014G077500 [exp] 535 / 0 AT1G12600 566 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Potri.016G139100 [exp] 59 / 2e-09 AT1G14360 560 / 0.0 UDP-galactose transporter 3 (.1) Potri.006G110500 [exp] 59 / 2e-09 AT1G14360 538 / 0.0 UDP-galactose transporter 3 (.1) Potri.008G209501 [exp] 53 / 3e-09 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF08449 [flax] [poplar] UAA UAA transporter family
Representative CDS sequence Show only first row Show all	>Lus10029605 pacid=23152042 polypeptide=Lus10029605 locus=Lus10029605.g ID=Lus10029605.BGIv1.0 annot-version=v1.0 ATGAAGGGCGAGGTTCAATCCAGGTCTCTGTTTGGGATTTCCCTCTCTGATCGACCAAAATGGCAGCAGTTCCTCATTTGCTCTTCTGGGTTCTTCTTCG GCTATCTTGTTAACGGCGTTTGTGAGGAATATGTGTACAATCGGCTCAAGTTCAGCTATGGATGGTACTTCACGTTTGTGCAAGGGTTTGTCTACCTGGG ACTGATTTACTTGCAGGGTTTCACCACCAAGCAAATGGTGAACCCATGGAAGACCTACGTCAAGCTCTCTGCTGTTCTTATGGGTTCTCATGGACTCACA AAGGGCTCCTTGGCTTTCCTTAATTATCCTGCTCAGATCATGTTCAAATCCACCAAGGTTCTTCCTGTCATGGTGATGGGTGCATTCATTCCCGGATTGC GAAGGAAATATCCGCTTCACGAATATGTCTCCGCCCTGCTTCTAGTCGTCGGTCTGATCCTTTTCACCTTGGCTGATGCCAAGACTTCTCCGGATTTCAG CGTCATCGGTGTTGTGATGATTTGTGGTGCTTTGGTTTTGGATTCTCTCATGGGTAATCTGCAAGAAGCTATCTTTACCATGAACCCAGACACAACTCAG ATTGAGGTGTTGTTCTGCTCAACCGTAGTTGGATTGCCGTTCTTGCTCCCACCAATGATCCTGACAGGAGAGCTGTTCACTGCCTGGAATTCTTGTGCTG AGCATCCATATGTGTACGGAGTGTTGGTCTTCGAGGCATTGGCTACATTTATCGGGCAAGTCTCTGTATTGTCGCTCGTTGCAATTTTCGGAGCTGCCTC TACTGCCATGATAACAACGGCTAGAAAGGCAGTGACTTTGTTGCTGTCATACCTGATATTTACGAAGCCTTTGACCGAGCAGCACGGATCCGGTCTGCTA CTGATCACAATGGGAATCATGCTGAAGATGATGCCGGATCCGAAAGTTCCTCAAAGGATTAAACCTAAGCAGCTGGAGTTCCAGGAGAAAGCCGGCACCG GTAGTACGAAATCCAAAGAAGAAGATGAAGAGAACAGACCCCTAGTTTGA
AA sequence Show only first row Show all	>Lus10029605 pacid=23152042 polypeptide=Lus10029605 locus=Lus10029605.g ID=Lus10029605.BGIv1.0 annot-version=v1.0 MKGEVQSRSLFGISLSDRPKWQQFLICSSGFFFGYLVNGVCEEYVYNRLKFSYGWYFTFVQGFVYLGLIYLQGFTTKQMVNPWKTYVKLSAVLMGSHGLT KGSLAFLNYPAQIMFKSTKVLPVMVMGAFIPGLRRKYPLHEYVSALLLVVGLILFTLADAKTSPDFSVIGVVMICGALVLDSLMGNLQEAIFTMNPDTTQ IEVLFCSTVVGLPFLLPPMILTGELFTAWNSCAEHPYVYGVLVFEALATFIGQVSVLSLVAIFGAASTAMITTARKAVTLLLSYLIFTKPLTEQHGSGLL LITMGIMLKMMPDPKVPQRIKPKQLEFQEKAGTGSTKSKEEDEENRPLV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12600			UDP-N-acetylglucosamine (UAA) ...		Lus10029605 [exp]	0	1
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10014075 [exp]	1.0	0.9476
AT3G61710		AtBECLIN1, ATAT...	BECLIN1, AUTOPHAGY 6 (.1.2.3)		Lus10012632 [exp]	2.0	0.9356
AT5G04250			Cysteine proteinases superfami...		Lus10038708 [exp]	3.3	0.9169
AT2G21620		RD2	Adenine nucleotide alpha hydro...		Lus10042316 [exp]	8.2	0.9307
AT1G16670			Protein kinase superfamily pro...		Lus10026207 [exp]	9.5	0.9100
AT4G28400			Protein phosphatase 2C family ...		Lus10008556 [exp]	9.8	0.9318
AT4G28400			Protein phosphatase 2C family ...		Lus10018618 [exp]	10.6	0.9145
AT5G11650			alpha/beta-Hydrolases superfam...		Lus10006043 [exp]	11.3	0.8710
AT1G65520		PEC11, ECHIC, A...	"delta\(3\), delta\(2\)-enoyl ...		Lus10005158 [exp]	13.0	0.9291
AT5G52430			hydroxyproline-rich glycoprote...		Lus10032276 [exp]	16.2	0.9163

Compare expression of checked genes

Lus10029605 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.