Plant FIBer expression Database

Lus10029606 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G11790 148 / 2e-39 Pleckstrin homology (PH) domain superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006338
[exp]
613 / 0 AT4G11790 324 / 3e-106 Pleckstrin homology (PH) domain superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G120900
[exp]
343 / 2e-113 AT4G11790 238 / 3e-73 Pleckstrin homology (PH) domain superfamily protein (.1)
Potri.001G111100
[exp]
340 / 1e-112 AT4G11790 246 / 9e-77 Pleckstrin homology (PH) domain superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0266 PH PF00638 Ran_BP1 RanBP1 domain
Representative CDS sequence
>Lus10029606 pacid=23152076 polypeptide=Lus10029606 locus=Lus10029606.g ID=Lus10029606.BGIv1.0 annot-version=v1.0
ATGAGAGGAACGAAACGTCTCGCCGCATCCGCATCGGAGTCGGCGCTATCGCGTGATGCAATTGACACCACTTTGAACACTAAAAGGGTAATGGGGTCCT
ATTCTGATGTTCATAAGGCACAAACATCGCAATCCTTTGATGTGAAACGGGCTGAGTCGTCTAGACAGCATGTGAGAGCTCTCAATTCCCAATTTGCCAG
CTGGGTGCAAAGACAACTCAAGGAACATCCTGATGAACTTTGGGAAGATGGAGTCCGTGACTATCTTGCTCATTCGTCCAACATCATGGAGAAGTTTAGT
GATGTAGTGAACTGGCTGAAAGCGAATGCAGCCAAGGATGGTCCTGGTGCTGAATCTTCTGCCAGCGACAAAAAAAATTCACCTGAAACGGGGAAGATTG
AGAAGAATGTATCCAAAGAGTCTGCTTTTCCATCCACAAGTGCGAGTTTTGCAGCTCCATGGCCCGCTACAATCTTCTCAAACAATCAAAGCTCTGGAGC
TGTATCTAGCAGTCAAAAGTTTGGCCTACTTCAGTCGAATAGCCCAAGCTCTAGCATATTCTCTAGTAGCCAAAGTACTGGCTTACTAGCAAATAGTCAA
AGTACTGGCTTACTAGCAAGCAGCCAGACTTCTGGGTTATTTTCAAATAGTCCGAAGTTTGGATCAATAACCAATAATCAAAATGCTGGGTTATTCTCCC
AGAGTCAAACCCAAAGCCCCGGGTCGCTATCAAATAGTCCAGGTGTGAGTTTATTCTCCACCAGCCAAACCCAATCCCCTGAAATACTGTCTAATAATCA
AGGTGCTGGCTTGTTCACAAATGGTAAGGGCCCTGCATTGTTTTCAAATAGTCAAACTACTGTTTCGTTAGCCAGCAGTCCAAGCAGTGGGTTGTTTTCA
ATGAATCCAGCCCCGCCGGGAGGGTTATTCAGCAGTCAAGCTCCTTTCTCGTTTGGGGGTCAAAGTTCTGCTCCCGTTAACAACAATGCTTCAGATGATG
CAGATGATGGAGATGAATTGCCTCGGCCTAGTAGTCCATCTGTGAAAAAGGCTGAAGAGAAGGGCGTGGTTGTTGTCCATGAAGTGAAGTGCAAACTCTA
TGTCAAGTCAATTGATCCAGCAGATAAAGGCGCATGGAAAGACAAAGGCCCTGGTCAGCTTAACATAAAATGCTCTGAAGGGATCAGCAAGGGCACAAAA
GAATCGAATCCAATAATTATTATCCGTAACGATGTAGGAAAGGTGTTGTTAAATGCTTTGCTTTATCCAGGAATCAAGACTAGTCTGCAGAAGAATGCAA
TCGTTGCCGTATTTCATGTAGCGGCCGATGATTCCGGCAGCAGTGACAGCGTAGTGGCCCGAACTTTCTTAATCAGAATGAAGACAGAGGAAGATCGGAA
CAAGCTATCAACAGCAATCAGTGAATATGCACCCGAATCGTGA
AA sequence
>Lus10029606 pacid=23152076 polypeptide=Lus10029606 locus=Lus10029606.g ID=Lus10029606.BGIv1.0 annot-version=v1.0
MRGTKRLAASASESALSRDAIDTTLNTKRVMGSYSDVHKAQTSQSFDVKRAESSRQHVRALNSQFASWVQRQLKEHPDELWEDGVRDYLAHSSNIMEKFS
DVVNWLKANAAKDGPGAESSASDKKNSPETGKIEKNVSKESAFPSTSASFAAPWPATIFSNNQSSGAVSSSQKFGLLQSNSPSSSIFSSSQSTGLLANSQ
STGLLASSQTSGLFSNSPKFGSITNNQNAGLFSQSQTQSPGSLSNSPGVSLFSTSQTQSPEILSNNQGAGLFTNGKGPALFSNSQTTVSLASSPSSGLFS
MNPAPPGGLFSSQAPFSFGGQSSAPVNNNASDDADDGDELPRPSSPSVKKAEEKGVVVVHEVKCKLYVKSIDPADKGAWKDKGPGQLNIKCSEGISKGTK
ESNPIIIIRNDVGKVLLNALLYPGIKTSLQKNAIVAVFHVAADDSGSSDSVVARTFLIRMKTEEDRNKLSTAISEYAPES

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G11790 Pleckstrin homology (PH) domai... Lus10029606
[exp]
0 1
AT2G46780 RNA-binding (RRM/RBD/RNP motif... Lus10002684
[exp]
8.5 0.7735
AT3G08800 SIEL SHORT-ROOT interacting embryon... Lus10012221
[exp]
10.0 0.7561
AT1G09000 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NP... Lus10031506
[exp]
10.1 0.7407
AT3G52200 LTA3 Dihydrolipoamide acetyltransfe... Lus10001967
[exp]
12.2 0.7248
AT2G37050 Leucine-rich repeat protein ki... Lus10023166
[exp]
15.8 0.7588
AT5G22370 QQT1, EMB1705 QUATRE-QUART 1, EMBRYO DEFECTI... Lus10007747
[exp]
16.9 0.7794
AT4G33280 B3 REM16 AP2/B3-like transcriptional fa... Lus10023691
[exp]
25.7 0.6707
AT3G05250 RING/U-box superfamily protein... Lus10004467
[exp]
26.9 0.6842
AT4G25450 ABCB28, ATNAP8 ARABIDOPSIS THALIANA NON-INTRI... Lus10038886
[exp]
32.7 0.7062
AT1G79650 AtAO1, RAD23B, ... RADIATION SENSITIVE23B, Arabid... Lus10026110
[exp]
36.8 0.6902

Lus10029606 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.